PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KFK26458.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 433aa MW: 47649.2 Da PI: 4.6829 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 118.5 | 3.6e-37 | 124 | 222 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 lfqrlw++eDei lL+G++d+ +++g+s++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +f++s+kiW++ KFK26458.1 124 LFQRLWTDEDEIELLRGFLDYmSSHRGSSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQATFDISRKIWNQ 222 79*******************778999999989****************************************************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.3E-34 | 125 | 221 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 433 aa Download sequence Send to blast |
MTSDERDAVE SPDLEEDGGV GGGGETDSDE DLPETEDLVI PETNDADEDD PEYEDLNSPS 60 MVSAVAPLVS CTTKSSSSTG TVTVALPAGS AVPVAAIPVD SEPKWHRMTE IVHHRPPIDD 120 SRRLFQRLWT DEDEIELLRG FLDYMSSHRG SSSHPPDTAP FYEQIKSKLQ LDFNKNQLVE 180 KLRRLKKKYR NVMSKISSGK EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDFDET 240 NNHNVTNANF PIANLNVDID SENGFEKKVT FTGSRKRSRS RSRVGKIDED KPIAQLDVPV 300 PNAATNVNLN DNVAASGDFI DGRHLGGLIE ETVRNCVSPL IKEMMNGTTG MMMAALGGFP 360 GGGAHSLGAL SPMLMPSMNL GFGVGGGGKA VGEERWRRQR ILELEVYSRR LELVQEQIRA 420 TVNELKTMPS IGT |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 274 | 282 | RKRSRSRSR |
2 | 275 | 280 | KRSRSR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KFK26458.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001318667.1 | 0.0 | DNA-binding storekeeper protein-related transcriptional regulator | ||||
Refseq | NP_198156.1 | 0.0 | DNA-binding storekeeper protein-related transcriptional regulator | ||||
Swissprot | F4K5T4 | 0.0 | STKLU_ARATH; Probable transcription factor At5g28040 | ||||
TrEMBL | A0A087G9A6 | 0.0 | A0A087G9A6_ARAAL; Uncharacterized protein | ||||
STRING | A0A087G9A6 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3098 | 27 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28040.1 | 0.0 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
---|---|---|---|
|