PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26025.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 306aa    MW: 34923 Da    PI: 9.916
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26025.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.4e-1819110196
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 ffk+l ++d ++  + ++p + +++++ +  +s++++l+ ++grsW vk+  +k+++  ++   GW++Fv++n+L e++ ++F+++ ++ f  +v +
  KFK26025.1  19 FFKILRREDLSSGIMRMIPHDLIRRISDN-SSSFKMVLKVPWGRSWPVKI--CKNPSFhFMEDHGWNQFVSDNDLGENEYLTFTHEANMYF--NVNI 110
                 99***9******9999**********766.589*****************..999999566669********************9988888..5555 PP
2B335.32.1e-112253041498
                 T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   l +pkkf ++h+ +  ++++ ++ +++g +s +v +    ++ +  +++GW++F+k+ gL +g +++Fkl++    e++v v +
  KFK26025.1 225 MFLGIPKKFKDAHMPS--KTRMFKIHHPEGnKSSDVLY--LVTDVQARFSAGWSRFAKELGLVVGNVCTFKLIK--PNEMLVEVSK 304
                 4588*********866..45589999988867888888..88888889***********************997..5556777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-1913115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-2014118IPR015300DNA-binding pseudobarrel domain
CDDcd100176.43E-1817111No hitNo description
PROSITE profilePS5086312.97119114IPR003340B3 DNA binding domain
PfamPF023621.8E-1619110IPR003340B3 DNA binding domain
SMARTSM010195.7E-2219114IPR003340B3 DNA binding domain
PROSITE profilePS508639.714212306IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-14212303IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-15212302IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-10213300No hitNo description
SMARTSM010197.4E-12215306IPR003340B3 DNA binding domain
PfamPF023624.2E-8224300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVKNSGFGQI MEDGDNPGFF KILRREDLSS GIMRMIPHDL IRRISDNSSS FKMVLKVPWG  60
RSWPVKICKN PSFHFMEDHG WNQFVSDNDL GENEYLTFTH EANMYFNVNI YESDGKEMLK  120
PRKSAANGSS SCRNRREKMK NIYKDVKEEE TESSSESSYS SLKTAESTGG RLKKKQKLNL  180
GKKKAEEIDK SKKKQKVDTV CNDSEAGTSS LVPEFELTIK KTYLMFLGIP KKFKDAHMPS  240
KTRMFKIHHP EGNKSSDVLY LVTDVQARFS AGWSRFAKEL GLVVGNVCTF KLIKPNEMLV  300
EVSKTP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420536.11e-159PREDICTED: B3 domain-containing protein At5g18000-like
SwissprotQ9FJG21e-145Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLA0A087G8230.0A0A087G823_ARAAL; Uncharacterized protein
STRINGA0A087G8230.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-131VERDANDI
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]