PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25955.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family AP2
Protein Properties Length: 581aa    MW: 63940.4 Da    PI: 6.2799
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25955.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.96.7e-15203262155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  KFK25955.1 203 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 262
                 57*******************666664478446*************************98 PP
2AP251.13.2e-16305356155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  KFK25955.1 305 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 356
                 57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-11203262IPR001471AP2/ERF domain
CDDcd000181.84E-21203270No hitNo description
SuperFamilySSF541715.04E-17203271IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-15204271IPR001471AP2/ERF domain
SMARTSM003801.4E-28204276IPR001471AP2/ERF domain
PROSITE profilePS5103219.164204270IPR001471AP2/ERF domain
PRINTSPR003674.1E-6205216IPR001471AP2/ERF domain
PfamPF008474.1E-11305356IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-17305365IPR016177DNA-binding domain
CDDcd000183.14E-24305364No hitNo description
PROSITE profilePS5103218.742306364IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-17306364IPR001471AP2/ERF domain
SMARTSM003809.7E-33306370IPR001471AP2/ERF domain
PRINTSPR003674.1E-6346366IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MNSMNNNNWL GFSLSPHHRT DVDSSSTTTA GEYCFDLTAA SDESSAVQTS YPSSFGVVLE  60
AFNRDNNSHS RDWDINGDAC NNINNNDQNG PKLENFLGRT TTGYNTNENV GDGSGSCGGG  120
DGGGSLGLSM IKTWLTNHHP VANVDHQDNG NGARGLSLSM NSSTTCDTNN YNNDNAVVQE  180
KTIVDSVEAT PKKTIESFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QTRKGRQVYL  240
GGYDKEEKAA RAYDLAALKY WGTTTTTNFP MCNYDEEVEV MKHMTRQEYV ASLRRKSSGF  300
SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFGTQ EEAAEAYDIA AIKFRGLSAV  360
TNFDMNRYNV KAILDSPSLP IGSAAKRLKE ANNPVPSLMI SSNVSENENN STGWQNTAFH  420
QHHQGMDLSL LQQQQERYGG YNYNGGNLSS ESSRICFKQE EDHHQQHFLS NSPSVMTNID  480
HHSSISDDSV TVCGNVAGYG GYQGFAVPVG TLVNSGAYAA AEIAYNARNH YYFGQQQQQI  540
QQQSPEGDFP VAISNNVGSN MYFHGEGGGE GASTFTVWND T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113124SGSCGGGDGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25955.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6878430.0EF687843.1 Arabidopsis thaliana ecotype C24 BABY BOOM (BBM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873828.10.0AP2-like ethylene-responsive transcription factor BBM
SwissprotQ8LSN20.0BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A087G7V30.0A0A087G7V3_ARAAL; Uncharacterized protein
STRINGA0A087G7V30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein