PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25823.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family CO-like
Protein Properties Length: 353aa    MW: 39225.4 Da    PI: 6.4422
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25823.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93e-061052440
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                + C+++ +   + +C+ ++ +lC +C  + H        H++v
  KFK25823.1 10 QACDTCRSAACTVYCRADSAYLCTSCDAQVHAAnrvasrHERV 52
                57******99*********************556677778776 PP
2zf-B_box36.21.2e-115297342
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 r+C+ +e+ ++ +fC+ +   lC  C +e+H+       H++vp+
  KFK25823.1 52 VRVCESCERAPAAFFCKADAASLCTACDSEIHSAnplarrHQRVPI 97
                689*****************************66899999**9997 PP
3CCT68.61.6e-23284328145
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++e
  KFK25823.1 284 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRKE 328
                 9*****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.893754IPR000315B-box-type zinc finger
SMARTSM003368.0E-8754IPR000315B-box-type zinc finger
CDDcd000211.17E-71254No hitNo description
PROSITE profilePS5011912.4435097IPR000315B-box-type zinc finger
PfamPF006432.7E-95297IPR000315B-box-type zinc finger
CDDcd000215.56E-105397No hitNo description
SMARTSM003361.8E-125597IPR000315B-box-type zinc finger
PfamPF062031.6E-17284326IPR010402CCT domain
PROSITE profilePS5101716.648284326IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMKQESNWAQ ACDTCRSAAC TVYCRADSAY LCTSCDAQVH AANRVASRHE RVRVCESCER  60
APAAFFCKAD AASLCTACDS EIHSANPLAR RHQRVPILPI SGNSYSSMPN NHSSETTVTT  120
DPENRLVVSQ EEEEDEAEAA SWLLPNSGKN NGNNNSQNNG FSIGDEYLDL VDYGSSMDKQ  180
FTDQSNQYQQ DYNVPQRSYG GDGVVPLQVE ELKGHMHHEQ HDFQFGFAHG SSGAHQSSIG  240
SLSHIGVVPE SPTSDITASH PRSPKAVADQ LLEPPTQVLS PMDREARVLR YREKKKTRKF  300
EKTIRYASRK AYAETRPRIK GRFAKRKEVD AEADQPFSTM IMFDTGYGIV PSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25823.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2401010.0AC240101.1 Sisymbrium irio clone SIR-39M12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400111.10.0zinc finger protein CONSTANS-LIKE 1
SwissprotO500550.0COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1
TrEMBLA0A087G7H10.0A0A087G7H1_ARAAL; Uncharacterized protein
STRINGA0A087G7H10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.11e-163CONSTANS-like 1
Publications ? help Back to Top
  1. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]
  2. An C, et al.
    Mediator subunit MED25 links the jasmonate receptor to transcriptionally active chromatin.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(42): p. E8930-E8939
    [PMID:28973940]
  3. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]