PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25766.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ZF-HD
Protein Properties Length: 268aa    MW: 29099.4 Da    PI: 8.2352
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25766.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.18.6e-3356112358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                   ++YkeClkNhAa +Ggha+DGCgEfmps++ + +++++l+CaACgCHRnFHRre++
   KFK25766.1  56 VATYKECLKNHAAGIGGHALDGCGEFMPSPSFNsNDPTSLTCAACGCHRNFHRREED 112
                  579****************************99899******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2755110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-2758111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.0E-3258110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.13759110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.38E-17167233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-26170232IPR009057Homeodomain-like
TIGRFAMsTIGR015654.0E-24175231IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDVIATTTTT IVPDLDSRQP DIEDPTRIQP PKPISVSFSN GKRCNHHNHK PASEAVATYK  60
ECLKNHAAGI GGHALDGCGE FMPSPSFNSN DPTSLTCAAC GCHRNFHRRE EDRPSSISTV  120
VPTMEFRPNN RHQLPPPPPP RPDDDGDDSA SPPPISSSYM LLALSGGGTA VQPSRKRHRT  180
KFSSFQKEKM FEFAERVGWR MLKADDVAVR EFCREIGVDK NVFKVWMHNN KIAGRGGARR  240
SNGGDGVGGG GGDSRESVPT NGSFSSTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-211742341676ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25766.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400038.11e-130zinc-finger homeodomain protein 8
SwissprotQ9LXG01e-130ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A087G7B40.0A0A087G7B4_ARAAL; Uncharacterized protein
STRINGA0A087G7B40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-121homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]