PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25750.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 559aa    MW: 60280.4 Da    PI: 7.146
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25750.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30237296159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+Hnh+
  KFK25750.1 237 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHNHS 296
                 58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-32222298IPR003657WRKY domain
SuperFamilySSF1182901.44E-27230298IPR003657WRKY domain
PROSITE profilePS5081128.874232298IPR003657WRKY domain
SMARTSM007745.5E-37237297IPR003657WRKY domain
PfamPF031064.8E-27238295IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MEVLLKQPTS DSPLKDKVLG SSPIHEANYK SDGDHQELES AKAEMSEVKE ENEKLKGMLE  60
RIESDYKSLK LRFFDIIQKE PSNNPTQSQN MVDHPKSTTD LSSLDHECEL VSLSLGRRSS  120
SPSRDNIPKK EEKIEAINAE VNGDKELTKA GLTLGFNNGN DGEPNKSLST ENPANSSVEN  180
SSEEAPGETW PPNKVTGKRN SPAPASGGDA DGGETGQQNH VKRARVCVRA RCDTPTMNDG  240
CQWRKYGQKI AKGNPCPRAY YRCTVAPGCP VRKQVQRCAE DMSILITTYE GTHNHSLPLS  300
ATTMASTTSA AASMLLSGSS SSSSSAAEMI GNNLYDNSRF TNSNKSFYSP TLHSPLHPTV  360
TLDLTAPQHP SSSSLPSLNF NKFPNSFQRF PSTSLNFSSN SSSSNSSTLN LPAIWGNGYS  420
SYTPYPYNNV QFGTSNLGKT VQHSQSLTET LTKALTSDPS FHSVIAAAIS TMVGSNGEQP  480
NLGPRRHPSS NNVQQTATAN NNKGCGGYFS SLLMSNIMAS NQTGASLDQP SSQLPPFSMF  540
KNSSPSSSTT SFVNKEDKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21224298174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871650.10.0probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A087G7980.0A0A087G798_ARAAL; Uncharacterized protein
STRINGA0A087G7980.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72