PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK25706.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Nin-like

Protein Properties

Length: 409aa MW: 45021.8 Da PI: 5.0887

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK25706.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	68.2	1.2e-21	94	127	19	52
RWP-RK 19 kdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +dAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ KFK25706.1 94 ADAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 127 69******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.254	61	147	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-20	86	127	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.78E-21	298	394	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.9E-21	307	388	No hit	No description
PROSITE profile	PS51745	18.052	309	391	IPR000270	PB1 domain
SMART	SM00666	3.2E-21	309	391	IPR000270	PB1 domain
Pfam	PF00564	1.1E-15	310	390	IPR000270	PB1 domain
CDD	cd06407	1.43E-36	310	390	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MYYKRDEYLR RKHAIDNEVC GSIAIPILEA SGTSCRAVME LVTSKEKPNF DMEMNSVCRA 60 LQAVNLRTSA IPRPQYLSSN QRDALAEIQD VLRADAAKSL GVCPTTLKRI CRQHGIMRWP 120 SRKINKVNRS LRKIQTVLDS VQGVEGGLKF DSATGEFIAI GLHVNYVHLR GQENMAEDAS 180 LDLLGVKSVD NAVKLEEDIT TNEAAPGSLI DINASGQPWG WMAEESGLNG SEGIKNVGNL 240 SSVANADGMD ATFRCSGNIV EPNQSMSCNI SDSSNGSGVV MRGTSSTSME DSNQMRSNNN 300 NSSESVSTTL TVKATYREDT IRFKFEPSVG CPQLYKEVGK RFKLQNGSFL LRYLDDEEEW 360 VMLVIDSDLQ ECLEILYGME KHLVKFLVRD LPAPTGSFAT NDNYLGTGS

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MYYKRDEYLR RKHAIDNEVC GSIAIPILEA SGTSCRAVME LVTSKEKPNF DMEMNSVCRA  60
LQAVNLRTSA IPRPQYLSSN QRDALAEIQD VLRADAAKSL GVCPTTLKRI CRQHGIMRWP  120
SRKINKVNRS LRKIQTVLDS VQGVEGGLKF DSATGEFIAI GLHVNYVHLR GQENMAEDAS  180
LDLLGVKSVD NAVKLEEDIT TNEAAPGSLI DINASGQPWG WMAEESGLNG SEGIKNVGNL  240
SSVANADGMD ATFRCSGNIV EPNQSMSCNI SDSSNGSGVV MRGTSSTSME DSNQMRSNNN  300
NSSESVSTTL TVKATYREDT IRFKFEPSVG CPQLYKEVGK RFKLQNGSFL LRYLDDEEEW  360
VMLVIDSDLQ ECLEILYGME KHLVKFLVRD LPAPTGSFAT NDNYLGTGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK25706.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001318414.1	1e-164	Plant regulator RWP-RK family protein
Refseq	NP_001325288.1	1e-164	Plant regulator RWP-RK family protein
Refseq	NP_001325289.1	1e-164	Plant regulator RWP-RK family protein
Refseq	NP_001325290.1	1e-164	Plant regulator RWP-RK family protein
Refseq	NP_001325291.1	1e-164	Plant regulator RWP-RK family protein
Refseq	NP_001325294.1	1e-164	Plant regulator RWP-RK family protein
Refseq	NP_001325295.1	1e-164	Plant regulator RWP-RK family protein
Refseq	NP_001325296.1	1e-164	Plant regulator RWP-RK family protein
Swissprot	O22864	1e-160	NLP8_ARATH; Protein NLP8
TrEMBL	A0A087G754	0.0	A0A087G754_ARAAL; Uncharacterized protein
STRING	A0A087G754	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	1e-153	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]