PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25688.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 609aa    MW: 68408.8 Da    PI: 7.4975
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25688.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.61.1e-313244621128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.......sgyWkatg 87 
                 lp+G++F+Ptdee++ e+L++k+  +     + ++++i +v di++++P++Lp  ++++ ++++fF k++k+y++g+rk+r+++       s +W++tg
  KFK25688.1 324 LPKGVKFDPTDEEVI-EHLEAKCGIDGlkphFLIQDFIFSVaDINYTHPQNLP-GANKDGTSVFFFNKTEKAYTKGERKRRKITpsclkgvSVRWHKTG 420
                 799************.99****87776556544455655555***********.55677899*******************6333566555778***** PP

         NAM  88 kdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                 k+k+vl  +g + glkk++v+yk   + +k+ek +Wv+h+y+l
  KFK25688.1 421 KTKPVLL-NGIQRGLKKVMVLYKSarKGSKPEKLNWVLHQYHL 462
                 *******.99************5433666777*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-33317480IPR003441NAC domain
PROSITE profilePS5100531.137324480IPR003441NAC domain
PfamPF023651.4E-12325462IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MAKKQNKKPV EQAPMEEVEL AMEEERYELL RTPQSNGLAS DSANETVVST FKKSKKKKKK  60
KKKDRSEKKE DTKLSPASEK KEVAESSVDS ATTKTKKRPL EESSSEVKEK RVKTEEKKRF  120
ERIWLEADEE ALLDAVITFG RNPLKEKTEF HDLVRPLIQI EVTLSQLESK SQAILGPNGI  180
LAVKREVKDK DKKPVVWVTG EDAWFVGSYL LGSVVIDGLS EETVKHAWNS FSKERKQKME  240
EKFRVSEMKA IKSAILKKDL ILEFTSSVMT RAWIVDGPWI ASNIKNASVS SALQIKDCGA  300
SINCPNCSYC IDNSNVLTPT WPGLPKGVKF DPTDEEVIEH LEAKCGIDGL KPHFLIQDFI  360
FSVADINYTH PQNLPGANKD GTSVFFFNKT EKAYTKGERK RRKITPSCLK GVSVRWHKTG  420
KTKPVLLNGI QRGLKKVMVL YKSARKGSKP EKLNWVLHQY HLGTEEEEIG TFVVSKITYQ  480
QQKQCEKTRD ESESFGVSIP EDEIAYEDTN IVLDSFVQGL DNIPEASSGL TSDATAHVAR  540
DMNVTEDNLV CKNVEASSSF VEKNLNHGNL DIASEKKLVS DLDNADLGTL TDFLSFASEE  600
SLFNCLGWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15462KKKKKKKKK
25662KKKKKKK
35868KKKKKDRSEKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25688.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873670.21e-176SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2
TrEMBLA0A087G7360.0A0A087G736_ARAAL; Uncharacterized protein
STRINGA0A087G7360.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50452651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.11e-164NAC domain containing protein 85