PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25626.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 210aa    MW: 23358.7 Da    PI: 5.5595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25626.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-191867255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  KFK25626.1 18 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 67
                678******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.16E-321774No hitNo description
PROSITE profilePS5103220.7191875IPR001471AP2/ERF domain
SMARTSM003803.9E-341881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-291975IPR001471AP2/ERF domain
PRINTSPR003672.3E-81930IPR001471AP2/ERF domain
PfamPF008473.4E-121967IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-211976IPR016177DNA-binding domain
PRINTSPR003672.3E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MNTPSSKSKK KQEEAGTRFL GVRRRPWGRY AAEIRDPSTK ERHWLGTFDT AEEAALAYDR  60
AARSMRGTRA RTNFVYSDMP PSSSVTSIVS PDDPPPPPPP VAPAPPPCHV DDPVDYMMMF  120
NQYSSTDSTM LQPNHSDQLD SYMFGGSNSC YSNNSTSELP PLPSDLSNSC YGYDYSSATY  180
FESDYVHSPM FSRMPPVSDS LPHGFNHFGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-201974359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25626.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF5469800.0HF546980.1 Arabis alpina erf gene for ethylene responsive transcription factor (ERF) like protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018460996.11e-107PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ9M6441e-102LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A087G6X41e-152A0A087G6X4_ARAAL; Uncharacterized protein
STRINGA0A087G6X41e-153(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-82ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]