PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25380.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family TALE
Protein Properties Length: 391aa    MW: 44313.2 Da    PI: 6.8657
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25380.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073313632254
                 SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +yp++e++++L +++gL+ +q+ +WF N+R +
  KFK25380.1 331 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 363
                 69*****************************87 PP
2ELK28.92.5e-10284305122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+++Y+++++++++E++
  KFK25380.1 284 ELKHELKQGYKEKIVDIREEIL 305
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-19119163IPR005540KNOX1
PfamPF037907.8E-18122162IPR005540KNOX1
SMARTSM012567.4E-27175230IPR005541KNOX2
PfamPF037911.2E-19180229IPR005541KNOX2
PROSITE profilePS512139.969284304IPR005539ELK domain
PfamPF037898.9E-7284305IPR005539ELK domain
SMARTSM011886.1E-4284305IPR005539ELK domain
PROSITE profilePS5007111.758304367IPR001356Homeobox domain
SMARTSM003895.2E-11306371IPR001356Homeobox domain
SuperFamilySSF466895.13E-16306370IPR009057Homeodomain-like
CDDcd000866.87E-11307368No hitNo description
Gene3DG3DSA:1.10.10.604.5E-25311368IPR009057Homeodomain-like
PfamPF059201.1E-17324363IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MAFHHNHFNN NFTDQQHQPP PPPQQQHFHN SAPPNWLLRS DNNFLNLHTT ASAAATSSDS  60
PSSAAAHQWL SRSSSFLHRG GDNNNXXXXX XXXXXXXTGG GEESMIIGQK KEQEKWQNAK  120
HKAEIINHPL YEQLLSAHVA CLRIATPVDQ LPRIDAQLAQ SQNVVAKYSS LETAQGLLAG  180
DEKELDHFMT HYVLLLCSFK EQLQQHVRVH AMEAVMACWE IEQSLQSFTG VSPGEGTGAT  240
MSEDEDEQVE SDAHLFDGSL DGLGFGPLVP TESERSLMER VRQELKHELK QGYKEKIVDI  300
REEILRKRRA GKLPGDTTSV LKSWWQSHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ  360
RKRNWHSNPS SSTVSKNKRR SNAGDNSGRE R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A7e-13307371872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25380.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533380.0AK353338.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287910.10.0homeobox protein knotted-1-like 4 isoform X1
SwissprotP480010.0KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A087G6780.0A0A087G678_ARAAL; Uncharacterized protein
STRINGA0A087G6780.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.10.0KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]