PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK25161.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

NAC

Protein Properties

Length: 320aa MW: 36884.7 Da PI: 9.124

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK25161.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.4	5.4e-57	17	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL+kkv + ++++ ++i +vd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++l KFK25161.1 17 LPPGFRFHPTDEELITHYLHKKVLDVEFSA-KAIGDVDLNKAEPWELPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIFR-GKSL 113 79************************99.88***********99999**************************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfykgrapkg+kt+Wvmheyrl KFK25161.1 114 VGMKKTLVFYKGRAPKGQKTNWVMHEYRL 142 ***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-64	14	167	IPR003441	NAC domain
PROSITE profile	PS51005	60.233	17	167	IPR003441	NAC domain
Pfam	PF02365	8.0E-30	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
METFGGFHKE DDEHMDLPPG FRFHPTDEEL ITHYLHKKVL DVEFSAKAIG DVDLNKAEPW 60 ELPYKAKMGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA TGKDKEIFRG KSLVGMKKTL 120 VFYKGRAPKG QKTNWVMHEY RLDGKLSAQN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI 180 RIGSYTTGSN LPHLTDSSPY INDKTKTEPI YVPCFSNQNE NRETILNYFS NNASLSSIQP 240 DFLQRIPLYQ PQSLNVSENQ ILTQEQSVLQ AMILENNRRQ SFKNTDVSSD FEFGRKRLDH 300 QEVPSSSSAG PVDVEPFWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	14	173	17	174	NAC domain-containing protein 19
3swm_B	1e-55	14	173	17	174	NAC domain-containing protein 19
3swm_C	1e-55	14	173	17	174	NAC domain-containing protein 19
3swm_D	1e-55	14	173	17	174	NAC domain-containing protein 19
3swp_A	1e-55	14	173	17	174	NAC domain-containing protein 19
3swp_B	1e-55	14	173	17	174	NAC domain-containing protein 19
3swp_C	1e-55	14	173	17	174	NAC domain-containing protein 19
3swp_D	1e-55	14	173	17	174	NAC domain-containing protein 19
4dul_A	1e-55	14	173	14	171	NAC domain-containing protein 19
4dul_B	1e-55	14	173	14	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00496	DAP	Transfer from AT5G07680	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK25161.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228027	0.0	AK228027.1 Arabidopsis thaliana mRNA for no apical meristem (NAM) -like protein, complete cds, clone: RAFL14-54-D06.
GenBank	BT006419	0.0	BT006419.1 Arabidopsis thaliana At5g07680 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006399249.1	0.0	NAC domain-containing protein 79
Swissprot	Q9FLR3	0.0	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A087G5K9	0.0	A0A087G5K9_ARAAL; Uncharacterized protein
STRING	A0A087G5K9	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	0.0	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]