PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25145.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 207aa    MW: 23254.7 Da    PI: 5.455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25145.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.3e-17105155255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  KFK25145.1 105 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDVDAARAYDYAAFKLRG 155
                 7********.**********954..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-30104164IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-22105164IPR016177DNA-binding domain
SMARTSM003801.8E-35105169IPR001471AP2/ERF domain
PfamPF008472.3E-11105155IPR001471AP2/ERF domain
PROSITE profilePS5103224.619105163IPR001471AP2/ERF domain
CDDcd000183.94E-19105163No hitNo description
PRINTSPR003673.6E-13106117IPR001471AP2/ERF domain
PRINTSPR003673.6E-13145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MATFEESSDL EAIQKHLFED FMVCDSFMGD FDFDASFVSG LWCVEPQAPK QEPDSPVLDP  60
DSFVKEFLQV EETESSSSSS SSSTRETTHS VSTKKKGKKL EEARHYRGVR RRPWGKFAAE  120
IRDPAKKGSR IWLGTFESDV DAARAYDYAA FKLRGRKAVL NFPLDAGKYE APANSGRKRK  180
RNDVQEELQR SQSNSSSSLS SDGETNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-29102164264ATERF1
3gcc_A6e-29102164264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25145.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507121e-90AY350712.1 Arabidopsis arenosa clone BAC Aer6D24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452727.11e-113PREDICTED: ethylene-responsive transcription factor ERF106
SwissprotQ9LY051e-108EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A087G5J31e-150A0A087G5J3_ARAAL; Uncharacterized protein
STRINGA0A087G5J31e-151(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-94ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]