PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25098.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NF-YC
Protein Properties Length: 294aa    MW: 32616.4 Da    PI: 4.9749
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25098.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC56.65.7e-186861898
       NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                ++++P arikki++adedv +i+  +Pvl+ska elf+ +l   ++  + +   +t+    ++++v+r ++fdfl ++v +
  KFK25098.1  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDHTYEITLQRGAKTVSSLHLKNCVERYNVFDFLREVVSK 86
                5789************************************************************************99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-25372IPR009072Histone-fold
SuperFamilySSF471139.84E-204101IPR009072Histone-fold
PfamPF008084.2E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDHT YEITLQRGAK  60
TVSSLHLKNC VERYNVFDFL REVVSKVPDY GPGHGHGHGQ ADVTMDERSV SKRRKPTGDE  120
VNDSDEDLKK TKVQEIAGPS GRGRGRGRGR GRGRSAKTAE RELLHREMDI EPMVLLAPPL  180
TLDGINMSAP TQQLPPQDSE NKDVDDGSNH PKQQLQSPKE GNDTNSGLGR GFDLNAHSLD  240
LEIKPPVVTT AGETKPEEYP GWSISDIGNI DPMQLVSMGK RLDEDEEDYD EEED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-22272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143152RGRGRGRGRG
2143153RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25098.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399184.11e-148dr1-associated corepressor isoform X1
TrEMBLA0A087G5E60.0A0A087G5E6_ARAAL; Uncharacterized protein
STRINGA0A087G5E60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35062458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-100nuclear factor Y, subunit C11