PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK24862.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 273aa    MW: 31752.8 Da    PI: 9.3906
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK24862.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.42.9e-14101150152
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIk 52 
                 ++ +hn+ Er RR+++N  ++ Lr+llP+ +   +++Kls  +++ ++v+YI 
  KFK24862.1 101 KKLNHNASERDRRRKLNGLYSSLRDLLPPsD---QKRKLSIPMTVARVVKYIP 150
                 6789*************************66...9999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.44E-1199157No hitNo description
SuperFamilySSF474591.44E-1499180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.386100152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-11101171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-11101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9106158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MCALTPQMFP NKQQEWYESA STMDYNPCLQ YSQVDSFAPT LQYDLPFFLY PNNLLAQPDD  60
SKSYNNINLH QQLSLSRRSN GTNSNTNNND QEELRGTVSE KKLNHNASER DRRRKLNGLY  120
SSLRDLLPPS DQKRKLSIPM TVARVVKYIP EQKQELQRLS RKKEELLKRI SRKTATLNHH  180
HQEQLRNRTM DSSMSANWIT DTEIAVQIAT SKWTSISDML LRLEENGLNV INVSSSVSST  240
ARIFYTLHLQ MSEYSKVRLE ELNDLIFGLR QSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK24862.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:17516080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530501e-66AK353050.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873137.21e-120transcription factor bHLH101
SwissprotQ9FYE63e-96BH101_ARATH; Transcription factor bHLH101
TrEMBLA0A087G4R00.0A0A087G4R0_ARAAL; Uncharacterized protein
STRINGA0A087G4R00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04150.15e-97bHLH family protein
Publications ? help Back to Top
  1. Maurer F,Naranjo Arcos MA,Bauer P
    Responses of a triple mutant defective in three iron deficiency-induced Basic Helix-Loop-Helix genes of the subgroup Ib(2) to iron deficiency and salicylic acid.
    PLoS ONE, 2014. 9(6): p. e99234
    [PMID:24919188]
  2. Martínez-Trujillo M, et al.
    Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana.
    Plant Mol. Biol., 2014. 86(1-2): p. 35-50
    [PMID:24928490]
  3. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  4. Van Dingenen J, et al.
    Strobilurins as growth-promoting compounds: how Stroby regulates Arabidopsis leaf growth.
    Plant Cell Environ., 2017. 40(9): p. 1748-1760
    [PMID:28444690]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  6. Kailasam S,Wang Y,Lo JC,Chang HF,Yeh KC
    S-Nitrosoglutathione works downstream of nitric oxide to mediate iron-deficiency signaling in Arabidopsis.
    Plant J., 2018. 94(1): p. 157-168
    [PMID:29396986]
  7. Kurt F,Filiz E
    Genome-wide and comparative analysis of bHLH38, bHLH39, bHLH100 and bHLH101 genes in Arabidopsis, tomato, rice, soybean and maize: insights into iron (Fe) homeostasis.
    Biometals, 2018. 31(4): p. 489-504
    [PMID:29546482]