PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK24624.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 265aa    MW: 29926.2 Da    PI: 5.7212
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK24624.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-092470346
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46
                      WT eE +++ +a + l  +    +W++Ia  ++ g+t  +++ r+  
       KFK24624.1 24 TWTVEENKRFEKALAFLDDKdnpeSWRKIADLIP-GKTVDDVIKRYKE 70
                     5*****************99**************.**********975 PP
2Myb_DNA-binding49.97.3e-16142186347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky
       KFK24624.1 142 PWTEEEHRRFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 186
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-41470IPR009057Homeodomain-like
PROSITE profilePS512937.1842074IPR017884SANT domain
SMARTSM007177.7E-72174IPR001005SANT/Myb domain
CDDcd001671.32E-72471No hitNo description
PfamPF002491.0E-72470IPR001005SANT/Myb domain
SuperFamilySSF466895.46E-92479IPR009057Homeodomain-like
PROSITE profilePS5129422.32135191IPR017930Myb domain
SuperFamilySSF466891.65E-17137190IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-18138190IPR006447Myb domain, plants
SMARTSM007171.9E-13139189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-13139186IPR009057Homeodomain-like
PfamPF002495.2E-13142186IPR001005SANT/Myb domain
CDDcd001671.92E-11142187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MNGGFEFFSP ENTNWFFQEV REATWTVEEN KRFEKALAFL DDKDNPESWR KIADLIPGKT  60
VDDVIKRYKE LEDDVSDIEA GLVPIPGYGG DASAGTTGDY YFGMENTGFG YDYGVGGKRS  120
SSAMSDDFRL PMPEKERKKG VPWTEEEHRR FLMGLKKYGK GDWRNIARNF VTTRTPTQVA  180
SHAQKYFIRQ LTDCKDKRRS SIHDITTVNV PDANASATTA TTAAATLSPT PTNDPFDVFL  240
PPPKPHHNFA FASASNYYNA FPQWS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK24624.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398645.11e-164transcription factor DIVARICATA
SwissprotQ8S9H73e-80DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A087G4220.0A0A087G422_ARAAL; Uncharacterized protein
STRINGA0A087G4220.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148841619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.11e-136MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]