PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK23146.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | NAC | ||||||||
Protein Properties | Length: 236aa MW: 27029.4 Da PI: 5.4489 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 127.4 | 1.1e-39 | 6 | 136 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 ++GfrF Pt++el+ +yL++++eg+ ++++vi+ +d++++eP++Lp+ ++++++++w+fF++r++++a+g r++r+t+sgyWkatg+ +v+sk KFK23146.1 6 TVGFRFYPTEDELIAFYLRNQLEGTIdESMHRVIPVLDVFEIEPSHLPNvageRCRGDSEQWFFFVPRQEREARGGRPSRTTSSGYWKATGSPGPVFSK 104 78**********************984555677***************646666666888*************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 +++ +g+kkt+vfy g+ap+g+kt+ m+ey+ KFK23146.1 105 DNRMIGVKKTMVFYIGKAPTGRKTKYKMNEYK 136 *******************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-44 | 3 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.019 | 5 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-21 | 7 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSEELTVGFR FYPTEDELIA FYLRNQLEGT IDESMHRVIP VLDVFEIEPS HLPNVAGERC 60 RGDSEQWFFF VPRQEREARG GRPSRTTSSG YWKATGSPGP VFSKDNRMIG VKKTMVFYIG 120 KAPTGRKTKY KMNEYKSVDE TDNFSTIPKL RHEYSLCRVY VTSGSSRAFD RRPMGDLQTE 180 RLILTRNVAA AETSSFRVES SPETSISGGE HVDLFLNTEM VDGLTEPIWD WEQLGW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-31 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 3e-31 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 3e-31 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 3e-31 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 3e-31 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 3e-31 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 3e-31 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 3e-31 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK23146.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009126539.1 | 1e-151 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 1e-144 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A087FZU4 | 1e-175 | A0A087FZU4_ARAAL; Uncharacterized protein | ||||
STRING | A0A087FZU4 | 1e-176 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-146 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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