PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK23120.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

CAMTA

Protein Properties

Length: 925aa MW: 105274 Da PI: 7.2663

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK23120.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.1	5e-51	31	146	4	118
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 e +rwl+++ei+a+L n++ +++ ++ t pksg+++L++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++nptf rrcywl KFK23120.1 31 EaYSRWLRPNEIHALLCNHKYFTINVKPVTLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGDDNPTFVRRCYWL 129 4489********************************************************************************************* PP CG-1 102 Leeelekivlvhylevk 118 L++++e+ivlvhy+e++ KFK23120.1 130 LDKSQEHIVLVHYRETH 146 ************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.052	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.3E-74	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.6E-45	32	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	4.9E-13	374	460	IPR014756	Immunoglobulin E-set
CDD	cd00204	1.61E-12	560	670	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.2E-14	561	673	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.49E-14	569	681	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.363	578	643	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.407	611	643	IPR002110	Ankyrin repeat
SMART	SM00248	1.1E-5	611	640	IPR002110	Ankyrin repeat
Pfam	PF00023	4.7E-4	611	642	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	7.199	760	786	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	260	775	797	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0036	798	820	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.139	799	823	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	874	896	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.334	875	904	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 925 aa Download sequence Send to blast
MAGVDSGRLI GSEIHGFHTL QDLDIQSVLE EAYSRWLRPN EIHALLCNHK YFTINVKPVT 60 LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP 120 TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSISDHISPK VVAEDINSGV 180 RNNTRNTGYE RNNSLGSRNH DIRLHEINTL DWDELLVPTD ISNQSHPTEE DMLYFTEQLQ 240 TVPRGSAKQG NDLQGYNPPT DIPSFHDLAD SFYQNNNNSS GAGEFSSQHL LCEVDSNVQR 300 RDSSAPVANE PVDGMLNNGF GSQESFGRWV NNFISDSPGS VEDPSLEAVF TPGQESSATP 360 VSDSHSDIPE QVFNITDVSP AWAYSTEKTK ILVTGFFHDS YQHFGRSNLY CICGELRVPA 420 EFLQLGVYRC FLPPQSPGVV NLYLSADGNT PISQLFSFEH RSIPVIEKAV PQDDQLYKWE 480 EFEFQVRLAH LLFTSSNKIA VFASKISPDS LLEAKKLASR TSHLLNSWAY LMKSIQANEV 540 PFDQARDHLF ELTLKNRLKE WLLEKVIENR NTKEYDSKGL GVIHLCAVLG YTWSILLFSW 600 ANISLDFRDK HGWSALHWAA YYGREKMVAA LLSAGARPNL VTDPTKEFLG GCTAADLAQQ 660 KGYDGLAAFL AEKCLVAQFK DMQMAGNITG NLEAIKAENS PNPGNSNEEE QSLKDTLAAY 720 RTAAEAAARI QGAFREHELK VRSTAVRVAS KEEDAKNIIA AMKIQHAFRN YEVRRKIAAA 780 ARIQYRFQTW KMRREFLNLR NKTIRIQAAF RGFQVRRQYQ KITWSVGVLE KAILRWRLKR 840 KGFRGLQVNQ AEEKEGSGTI EDFYKTSQKQ AEERLERSVV RVQAMFRSKK AQQDYRRMKV 900 AHEEAQLEYD GMQEQDRMAM ETDMK

Sequence ? help Back to Top

Protein Sequence Length: 925 aa Download sequence Send to blast

MAGVDSGRLI GSEIHGFHTL QDLDIQSVLE EAYSRWLRPN EIHALLCNHK YFTINVKPVT  60
LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP  120
TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSISDHISPK VVAEDINSGV  180
RNNTRNTGYE RNNSLGSRNH DIRLHEINTL DWDELLVPTD ISNQSHPTEE DMLYFTEQLQ  240
TVPRGSAKQG NDLQGYNPPT DIPSFHDLAD SFYQNNNNSS GAGEFSSQHL LCEVDSNVQR  300
RDSSAPVANE PVDGMLNNGF GSQESFGRWV NNFISDSPGS VEDPSLEAVF TPGQESSATP  360
VSDSHSDIPE QVFNITDVSP AWAYSTEKTK ILVTGFFHDS YQHFGRSNLY CICGELRVPA  420
EFLQLGVYRC FLPPQSPGVV NLYLSADGNT PISQLFSFEH RSIPVIEKAV PQDDQLYKWE  480
EFEFQVRLAH LLFTSSNKIA VFASKISPDS LLEAKKLASR TSHLLNSWAY LMKSIQANEV  540
PFDQARDHLF ELTLKNRLKE WLLEKVIENR NTKEYDSKGL GVIHLCAVLG YTWSILLFSW  600
ANISLDFRDK HGWSALHWAA YYGREKMVAA LLSAGARPNL VTDPTKEFLG GCTAADLAQQ  660
KGYDGLAAFL AEKCLVAQFK DMQMAGNITG NLEAIKAENS PNPGNSNEEE QSLKDTLAAY  720
RTAAEAAARI QGAFREHELK VRSTAVRVAS KEEDAKNIIA AMKIQHAFRN YEVRRKIAAA  780
ARIQYRFQTW KMRREFLNLR NKTIRIQAAF RGFQVRRQYQ KITWSVGVLE KAILRWRLKR  840
KGFRGLQVNQ AEEKEGSGTI EDFYKTSQKQ AEERLERSVV RVQAMFRSKK AQQDYRRMKV  900
AHEEAQLEYD GMQEQDRMAM ETDMK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK23120.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY128295	0.0	AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006282550.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A087FZR8	0.0	A0A087FZR8_ARAAL; Uncharacterized protein
STRING	A0A087FZR8	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]