PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK22396.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 284aa    MW: 31992.2 Da    PI: 10.6597
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK22396.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64e-12124165349
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49 
                 ++h+ +ErrRR riNs f++Lr++lP++      K +Ka++L ++v+
  KFK22396.1 124 KKHSDAERRRRLRINSQFATLRTILPNL-----VKQDKASVLGETVR 165
                 68*************************9.....7********99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-11117176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.062121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-8124175No hitNo description
PfamPF000107.5E-10124165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-11125175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSLYSHTTKS TFLLHCVTSR SLLCHHGFTS TCNFFFVISS MINQTCSFSL NQFLNILFWF  60
LVLCFMQLEQ GMRPILRCYN PTMCSTTMGR NFFTGATTSD KLFSRSFLTV KLKMKTESKE  120
VAAKKHSDAE RRRRLRINSQ FATLRTILPN LVKQDKASVL GETVRNFNEL KKMVKEIPTT  180
PALEDSLRLG HCNNRDMTRV VFSCSDREGL MTELSESMKT VNAKAVRAEI MTVGGRSKCA  240
LFIQGVNGNE GLIRLKKSLK HVVNGKSSAA KNNNNNGGSL LTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK22396.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001320156.11e-126transcription factor bHLH131-like protein
SwissprotP0CB251e-127BH131_ARATH; Transcription factor bHLH131
TrEMBLA0A087FXP40.0A0A087FXP4_ARAAL; Uncharacterized protein
STRINGA0A087FXP40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-111bHLH family protein