PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold08354-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NF-YA
Protein Properties Length: 197aa    MW: 21749.4 Da    PI: 9.9427
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold08354-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1056.6e-3368124158
                                         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                                       +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF
  snap_masked-scaffold08354-abinit-gene-0.6-mRNA-1  68 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRERGTGGRF 124
                                                       69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-3566127IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.61467127IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-2869124IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-247092IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607292IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.5E-24101124IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MKLKNALHGW IFAFSLGSLA ITLMLQPNNN DNNNDKLDND SNINLYSGYP PFLGMPHARM  60
PLPLEMAQEP VYVNAKQYQG ILRRRQARAK AELEKKLIKV RKPYLHESRH QHAMRRERGT  120
GGRFAKKTAA EAANEAKEKG TGSGPALSSQ SASSSGSEPL LTDSAETWNS SHGQPEGRHN  180
APEAHNYAVQ DPHGPNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-1968124258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023922366.12e-85nuclear transcription factor Y subunit A-1-like
SwissprotQ945M97e-50NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A2N9IUQ62e-79A0A2N9IUQ6_FAGSY; Uncharacterized protein
STRINGXP_008227314.11e-67(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.16e-43nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]