PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | snap_masked-scaffold02766-abinit-gene-0.16-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | bHLH | ||||||||
Protein Properties | Length: 337aa MW: 38050.6 Da PI: 6.1925 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 182 | 228 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++ErrRR+++ ++f L ++P + kK++Ka++L +A++Y+k+Lq snap_masked-scaffold02766-abinit-gene-0.16-mRNA-1 182 DHIIAERRRREKLSERFIALSAIVPGL-----KKMDKASVLGEAINYVKELQ 228 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.145 | 178 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-17 | 182 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-17 | 182 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-10 | 182 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.42E-12 | 183 | 232 | No hit | No description |
SMART | SM00353 | 5.6E-14 | 184 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MEISSAKWLS ELGMDEYNYI HQSHMNTLDG FTTHEMATAM VENFQQSLSS ESYSSYPTFT 60 KKATTTFSNT SAETSQRPAK QPKTNSWDSY ITDHVSPKPS SSSHILSFEN SISMLTNPQE 120 FYGSHDSSLK LNNEMVSQAN IHFPPLISKD SFENQDYARK ASLQGIKRTY SSMTRNPSNA 180 QDHIIAERRR REKLSERFIA LSAIVPGLKK MDKASVLGEA INYVKELQER IKLFEEQTKK 240 RTVESVVFVK KSQLSADDDT SSCNENSDNH SDEALLEIEA RISEKDVLIR IHCEKQKGAI 300 VKILSEIEKL NLTVVNSSVL PFGNSTIDIT IIAQEFI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 191 | ERRRRE |
2 | 187 | 192 | RRRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023893406.1 | 0.0 | transcription factor bHLH25-like | ||||
TrEMBL | A0A2N9J9C0 | 0.0 | A0A2N9J9C0_FAGSY; Uncharacterized protein | ||||
STRING | EOX91822 | 1e-141 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-66 | bHLH family protein |