PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold02287-abinit-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 868aa    MW: 96813.9 Da    PI: 4.7547
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold02287-abinit-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.4e-124886948
                                                       HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                    Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                       dell +av+ + g++Wk+Ia+++   Rt+ qc +rwqk+l
  snap_masked-scaffold02287-abinit-gene-0.13-mRNA-1 48 DELLRRAVEHYKGKSWKRIAECFK-DRTDVQCLHRWQKVL 86
                                                       89*********************9.************986 PP
2Myb_DNA-binding621.2e-1992138148
                                                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                        +g+W++eEde+++++v+++G++ W+tIa+ ++ gR +kqc++rw+++l
  snap_masked-scaffold02287-abinit-gene-0.13-mRNA-1  92 KGPWSKEEDEKIIELVNRYGSKKWSTIAEALP-GRIGKQCRERWHNHL 138
                                                        79******************************.*************97 PP
3Myb_DNA-binding51.91.7e-16144186145
                                                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                                    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                                        + +WT+eE++ l++a++ +G++ W+  ++ ++ gRt++ +k++w+
  snap_masked-scaffold02287-abinit-gene-0.13-mRNA-1 144 KEPWTEEEELALIRAHQIYGNK-WAELSKFLP-GRTDNAIKNHWN 186
                                                        679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.6E-63988IPR001005SANT/Myb domain
PROSITE profilePS512948.294386IPR017930Myb domain
CDDcd001672.79E-94886No hitNo description
Gene3DG3DSA:1.10.10.608.3E-154896IPR009057Homeodomain-like
PfamPF002498.5E-104886IPR001005SANT/Myb domain
SuperFamilySSF466897.9E-114896IPR009057Homeodomain-like
PROSITE profilePS5129429.88287142IPR017930Myb domain
SuperFamilySSF466895.24E-3289185IPR009057Homeodomain-like
SMARTSM007172.7E-1891140IPR001005SANT/Myb domain
CDDcd001674.21E-1694138No hitNo description
PfamPF139214.2E-1995153No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2797146IPR009057Homeodomain-like
PROSITE profilePS5129420.516143193IPR017930Myb domain
SMARTSM007172.0E-16143191IPR001005SANT/Myb domain
CDDcd001672.99E-13146186No hitNo description
Gene3DG3DSA:1.10.10.603.3E-22147193IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MSRFSTTSCK RVRPPVNTAP RRETDASQKM RPIIGFFGLV VVYHDIRDEL LRRAVEHYKG  60
KSWKRIAECF KDRTDVQCLH RWQKVLNPEL FKGPWSKEED EKIIELVNRY GSKKWSTIAE  120
ALPGRIGKQC RERWHNHLNP NISKEPWTEE EELALIRAHQ IYGNKWAELS KFLPGRTDNA  180
IKNHWNSSVK KKLQSYLASG LLEQFQGLPY VGNPSSSSVG VQQCQADVFE DENSDCSQGS  240
IAVICSQFDS GTENATRNLR TEETVCRKGH NMEKYSFLEA ETPGHEDYHF SSHNPPNSFV  300
DDSQESSGFG TSEHSNYVNE SRDKHSILSR SSVGFNTSAT TENMNLLISE SDFFENAFSV  360
TRIPGFFFDG NVTEKSNNLD ARKNSVICQS DSQNSATTRI FAMESCDPLK DVPGGTSEFE  420
AITSSRDDFI YVDSPDIDVD EKDDPMKIDE VKNNPKLVPV DIFSAVVSDS MQKISSNDEN  480
AKQISKSDEA MVTSKLAPAD LFGSVNSDSM QLLPSMDENG ATAYKDGRGS GSLCYEPPCF  540
PSLDIPSLNF DPIASGGDIQ QAYSPLGIRQ LLMRPMNLSS PSSLWDSPSY KSTPEAILKN  600
AIDETKEDKK LGKDTNMKKF SLASPFSSLE SILDENGALA MSISSIEEML DCVVDQKVNT  660
AESMHDKANT DHAFEENKES IAKESRILEK DVGITNSLEK IKKSTLNIDP KANVDADTTF  720
IIPTGLLVEH NSDDQLVFSP DTDEHQTTRA LSMAILSPKG QYVIRLDTKS YQDDNIESSS  780
LKNEKCIVPA TSSECAPSLR PLETSGNYGN VADIQSFGMF DETPDRKRGI ESPSAWKSPW  840
FLGTFLPPRV DADMTLEPCG IIKLYTEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-644819314159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-644819314159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023881221.10.0transcription factor MYB3R-1-like isoform X2
TrEMBLA0A2N9ITA20.0A0A2N9ITA2_FAGSY; Uncharacterized protein
STRINGVIT_11s0016g03750.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-120myb domain protein 3r-4