PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold01324-abinit-gene-0.21-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 198aa    MW: 22869.2 Da    PI: 9.597
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold01324-abinit-gene-0.21-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-175599348
                                                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                        W++ Ed ll  +vk++ g+ Wk Ia++++ gRt+ qc ++wqk+l
  snap_masked-scaffold01324-abinit-gene-0.21-mRNA-1 55 GWSEKEDNLLSALVKKYNGKKWKQIAAHIP-GRTDVQCLHHWQKVL 99
                                                       6*****************************.************986 PP
2Myb_DNA-binding59.57.5e-19105151148
                                                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                        +g+WT+eEd+ +++ vk +G ++W++Ia+ ++ gR +kqc++rw+++l
  snap_masked-scaffold01324-abinit-gene-0.21-mRNA-1 105 KGSWTKEEDDCIIEFVKNYGCKRWSLIAKNLP-GRIGKQCRERWFNHL 151
                                                        799*****************************.*************97 PP
3Myb_DNA-binding33.31.1e-10157189135
                                                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
                                    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 
                                                        +++WT+eE+  ++ +++++G++ W+ Iar ++ gR
  snap_masked-scaffold01324-abinit-gene-0.21-mRNA-1 157 KDAWTEEEESVIAYYHHKYGNK-WAQIARFLP-GR 189
                                                        689*******************.*********.99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577129No hitNo description
PROSITE profilePS5129416.1884799IPR017930Myb domain
SuperFamilySSF466896.1E-1649106IPR009057Homeodomain-like
SMARTSM007178.2E-1552101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2355115IPR009057Homeodomain-like
PfamPF002495.4E-155599IPR001005SANT/Myb domain
CDDcd001671.48E-125699No hitNo description
PROSITE profilePS5129429.246100155IPR017930Myb domain
SuperFamilySSF466896.6E-27102190IPR009057Homeodomain-like
SMARTSM007178.9E-16104153IPR001005SANT/Myb domain
PfamPF002493.1E-18105151IPR001005SANT/Myb domain
CDDcd001674.80E-14107151No hitNo description
Gene3DG3DSA:1.10.10.603.8E-27116157IPR009057Homeodomain-like
SMARTSM007170.014156196IPR001005SANT/Myb domain
PROSITE profilePS512949.763156198IPR017930Myb domain
PfamPF002491.5E-8157189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-14158193IPR009057Homeodomain-like
CDDcd001672.28E-5159189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MVKVKKEKEE LAANSAKEVQ FASCSLQSCG NCDTPVLRCS VIGRPTGPTR RSRRGWSEKE  60
DNLLSALVKK YNGKKWKQIA AHIPGRTDVQ CLHHWQKVLN PEVVKGSWTK EEDDCIIEFV  120
KNYGCKRWSL IAKNLPGRIG KQCRERWFNH LDPAINKDAW TEEEESVIAY YHHKYGNKWA  180
QIARFLPGRY VSEINVLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-55561949147MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-55561949147MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904204.11e-130uncharacterized protein LOC112015974
RefseqXP_023904205.11e-130uncharacterized protein LOC112015974
RefseqXP_023904206.11e-130uncharacterized protein LOC112015974
RefseqXP_023904207.11e-130uncharacterized protein LOC112015974
SwissprotQ6R0322e-68MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A2I4FAN38e-96A0A2I4FAN3_JUGRE; uncharacterized protein LOC108997066 isoform X2
STRINGXP_010676520.12e-80(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.24e-64myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]