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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g044941m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 203aa MW: 23095.2 Da PI: 6.6566 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.6 | 3.3e-06 | 108 | 127 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+ +++tG C++G rC++ H orange1.1g044941m 108 CPLHLKTGACRFGQRCSRVH 127 999***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.145 | 102 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-4 | 108 | 127 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 2.1E-10 | 108 | 127 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 2.1E-10 | 127 | 147 | IPR009145 | U2 auxiliary factor small subunit |
SuperFamily | SSF53335 | 1.28E-9 | 146 | 198 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 4.4E-12 | 146 | 197 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF00891 | 2.0E-9 | 146 | 193 | IPR001077 | O-methyltransferase, family 2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0008171 | Molecular Function | O-methyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
LRRVLGASRI WRRKENECDE DDDWESVEEG PAEIIWQGNE IIIRKKKVRV PKKDANPLSK 60 KEDVDRPTSN PLPPQSEAFA DHQNAQQALE TVAQQVPNFG TEHDKAHCPL HLKTGACRFG 120 QRCSRVHFYP NKSCTLLIKN MYNVKFQWVL TTWTDDECKL IMENCYKALP AGGKLIACEP 180 VLPDDSNESQ RTRALLEGDI LL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.3729 | 2e-74 | callus| flower| fruit| leaf| seed |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU947921 | 2e-83 | KU947921.1 Toxicodendron vernicifluum microsatellite c30304 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024046556.1 | 6e-84 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 5-like | ||||
Swissprot | Q9SY74 | 2e-59 | C3H5_ARATH; Zinc finger CCCH domain-containing protein 5 | ||||
TrEMBL | A0A067DJF7 | 1e-102 | A0A067DJF7_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006423800.1 | 2e-92 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5975 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 4e-52 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g044941m |
Publications ? help Back to Top | |||
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