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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
orange1.1g044828m |
| Common Name | CISIN_1g044828mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
AP2 |
| Protein Properties |
Length: 618aa MW: 67285 Da PI: 9.0914 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g044828m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 34.3 | 5.7e-11 | 239 | 298 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d + g k + + ++ +e+Aa+a++ a++k++g
orange1.1g044828m 239 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsrKGrQGKY-SGYDKEEKAARAYDLAALKYWG 298
57*******************66555446642234444.4477799*************98 PP
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| 2 | AP2 | 46.9 | 6.8e-15 | 341 | 392 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g
orange1.1g044828m 341 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 392
57****************988532...5************************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009845 | Biological Process | seed germination |
| GO:0040019 | Biological Process | positive regulation of embryonic development |
| GO:0048364 | Biological Process | root development |
| GO:0060772 | Biological Process | leaf phyllotactic patterning |
| GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 618 aa
Download sequence Send
to blast |
QHKIFSLSFL PLFPKKQTPL LFFSLVSLSY FTLTDTAQSK MNNNNNNNMN VNLSSSSSSS 60
NSINMDHSAW LGFSLSNNNL QTSSTSDPES SHICLFEAFT TAATATTASG SNINLARGRG 120
GEATGIASAT DLSIFTGSPK LEDFLGGSCT ATPPQPPQVQ LGHHHLSSAT TAHEIYDSEL 180
KTIAASFLRG FATEQTDSHH QQQQQQHLKH HHQQQQQLVP LVAQPAPKKT VDTFGQRTSI 240
YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGKYSGYD KEEKAARAYD LAALKYWGPT 300
TTTNFPVSNY EKELEDMKNM TRQEFVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG 360
RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIA NSNLPIGGIT 420
GKSKNSSESV SDCKSLDGGS RSDDRDISSA SSHLAAFASS HPATSTLSFA LPIKQDPSAD 480
YWSNLLGYQN NTTATPLTNA KSLSIAPTYL QSPTSSPSFN VDFAANPSSG VNESSNNGLF 540
NVGNYLQQQQ QQQQGGVSNS TTTTTTSAHT GSSNIPFATP IGLNSNSYES WISPSLHSFQ 600
TAKPSLSVFQ TPIFGME*
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| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ567400 | 1e-153 | AJ567400.1 Citrus reticulata microsatellite DNA, clone Ci01G11. |
| Publications
? help Back to Top |
- Todd J,Post-Beittenmiller D,Jaworski JG
KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
Plant J., 1999. 17(2): p. 119-30
[PMID:10074711] - Molitor AM,Bu Z,Yu Y,Shen WH
Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
PLoS Genet., 2014. 10(1): p. e1004091
[PMID:24465219] - Feng J,Chen D,Berr A,Shen WH
ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
Plant Physiol., 2016. 172(3): p. 1746-1759
[PMID:27630184] - Santuari L, et al.
The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
Plant Cell, 2016. 28(12): p. 2937-2951
[PMID:27920338] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
[PMID:29078398]
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