PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g044351m

Common Name

CISIN_1g044351mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 1173aa MW: 130854 Da PI: 9.3496

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g044351m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.1	2e-08	43	79	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++ E +++++a + +G++ Wk++a+ + +R+++++ orange1.1g044351m 43 QWSKGELQRFYEAYRNYGKD-WKKVAAQVR-NRSAEMVE 79 6***************99.*****.**9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.012	39	92	IPR017884	SANT domain
SMART	SM00717	0.0025	40	88	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.37E-9	40	87	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.3E-5	43	83	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-7	43	83	IPR001005	SANT/Myb domain
CDD	cd00167	2.23E-4	44	78	No hit	No description
Pfam	PF06584	6.0E-22	653	718	IPR033471	DIRP domain
SMART	SM01135	1.1E-30	653	726	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1173 aa Download sequence Send to blast
MAPTRKSRSV NKRYANEVSP AKDVISPSKS KQKKKLSDKL GPQWSKGELQ RFYEAYRNYG 60 KDWKKVAAQV RNRSAEMVEA LYNMNRAYLS LPEGTASVVG LIAMMTDHYN VMEGSDSERE 120 SNDASEMPRK SQKRKRAKVQ LSASKEDISQ SWSMAATGGC LSLLKRSRID GNQPRAVKKR 180 TPRFPVSYSQ KKDDRDDYIP LNKKDRRSAV DANDDEVAHV AALALTEASQ RGGSPQVSQS 240 PHKKTEHGKS SPVQIWDKMF PPAETAHPDA REALNEEGCP EARILNRRPE NGAYTRARKS 300 LMDMEGVGTV EVHRKGKKFY RKKMKVEEVR NSLSDDEGEA CSGTEEGLSS RKGKVGSEIS 360 NAKNDHLPLQ MQRKRSKKLF FGDESTALNA LQTLADLSLM LPDSTMESES SVQLKEERTA 420 FDIDDKSSAP EETSTSHPKE KIKHLGPKEK ALNTITEAED IIPRKSKLGR YSGNDVETVA 480 EVKEQPEPPN SMSKRKRKSV LSKKISNSEA VTDTHMTRTL ESEAVAEEHN KFASKGKRTS 540 QNSAQSKQWK PGRVLEGSSV NDQNRASIDL VAPTGQAPVA SPASSPTKHQ SRRKMDLKRK 600 LSSKEMKFSE NSLKTQPNKN SLSQEDRLLS MKEKLSGCLS SNMVRRWCTF EWFYSAIDYP 660 WFSNREFVEY LNHVGLGHIP RLTRVEWGVI RSSLGKPRRL SKRFLHDERE KLKQYRESRV 720 IAIHPKTREL HDGSVLTIDH DKCRVQFDRP ELGVEFVMDI DSMPSNPLDN MPEALRRQIS 780 ADKFSAISKE LQVNGHPNFG SPMLFASDGH LEKAPILPNT LQKQAKGDMN HALPQAKSLA 840 TDIVSAQQAA YGQLCTVPQI QAREATVRAL SEEALLMELK NTNNDILESQ NGGESSLKDS 900 EPLKKHIATV LVQLKEANDQ ACGFRELCFG ISCYLSLQFH TLTWRRSLID CFDMQASSAL 960 LQVRQCNTHP ESSRPSWPMH PANVKMLDNS HVSQESGSAV AEIVNGSRLK AHTMVDAAVK 1020 AMSSVKEGED AYTKIGEALD HIDKRQLTSD PRVSVIRSPE QVNGSLGHHN HFVSGTCDPQ 1080 PTNNASGTKL QDVSDKNEAQ IPSELITSCV ATLLMIQTCT ERHTPADVAQ IIDSAVSSLH 1140 PCCPQNLPIY REIEMCMGRI KTQILALIPT SI*

Sequence ? help Back to Top

Protein Sequence Length: 1173 aa Download sequence Send to blast

MAPTRKSRSV NKRYANEVSP AKDVISPSKS KQKKKLSDKL GPQWSKGELQ RFYEAYRNYG  60
KDWKKVAAQV RNRSAEMVEA LYNMNRAYLS LPEGTASVVG LIAMMTDHYN VMEGSDSERE  120
SNDASEMPRK SQKRKRAKVQ LSASKEDISQ SWSMAATGGC LSLLKRSRID GNQPRAVKKR  180
TPRFPVSYSQ KKDDRDDYIP LNKKDRRSAV DANDDEVAHV AALALTEASQ RGGSPQVSQS  240
PHKKTEHGKS SPVQIWDKMF PPAETAHPDA REALNEEGCP EARILNRRPE NGAYTRARKS  300
LMDMEGVGTV EVHRKGKKFY RKKMKVEEVR NSLSDDEGEA CSGTEEGLSS RKGKVGSEIS  360
NAKNDHLPLQ MQRKRSKKLF FGDESTALNA LQTLADLSLM LPDSTMESES SVQLKEERTA  420
FDIDDKSSAP EETSTSHPKE KIKHLGPKEK ALNTITEAED IIPRKSKLGR YSGNDVETVA  480
EVKEQPEPPN SMSKRKRKSV LSKKISNSEA VTDTHMTRTL ESEAVAEEHN KFASKGKRTS  540
QNSAQSKQWK PGRVLEGSSV NDQNRASIDL VAPTGQAPVA SPASSPTKHQ SRRKMDLKRK  600
LSSKEMKFSE NSLKTQPNKN SLSQEDRLLS MKEKLSGCLS SNMVRRWCTF EWFYSAIDYP  660
WFSNREFVEY LNHVGLGHIP RLTRVEWGVI RSSLGKPRRL SKRFLHDERE KLKQYRESRV  720
IAIHPKTREL HDGSVLTIDH DKCRVQFDRP ELGVEFVMDI DSMPSNPLDN MPEALRRQIS  780
ADKFSAISKE LQVNGHPNFG SPMLFASDGH LEKAPILPNT LQKQAKGDMN HALPQAKSLA  840
TDIVSAQQAA YGQLCTVPQI QAREATVRAL SEEALLMELK NTNNDILESQ NGGESSLKDS  900
EPLKKHIATV LVQLKEANDQ ACGFRELCFG ISCYLSLQFH TLTWRRSLID CFDMQASSAL  960
LQVRQCNTHP ESSRPSWPMH PANVKMLDNS HVSQESGSAV AEIVNGSRLK AHTMVDAAVK  1020
AMSSVKEGED AYTKIGEALD HIDKRQLTSD PRVSVIRSPE QVNGSLGHHN HFVSGTCDPQ  1080
PTNNASGTKL QDVSDKNEAQ IPSELITSCV ATLLMIQTCT ERHTPADVAQ IIDSAVSSLH  1140
PCCPQNLPIY REIEMCMGRI KTQILALIPT SI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006433346.1	0.0	protein ALWAYS EARLY 2 isoform X2
TrEMBL	A0A067EMK4	0.0	A0A067EMK4_CITSI; Uncharacterized protein
STRING	XP_006433342.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	orange1.1g044351m