PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g043493m | ||||||||
Common Name | CISIN_1g043493mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Dof | ||||||||
Protein Properties | Length: 255aa MW: 26709.6 Da PI: 7.6392 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.9 | 2.3e-38 | 26 | 84 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprC+st tkfCyynny+lsqPr+fCk+CrryWt+GG+lrn+PvGgg+rkn k+ orange1.1g043493m 26 TESLPCPRCESTSTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRNIPVGGGTRKNSKR 84 67899***************************************************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-21 | 27 | 77 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.4E-33 | 28 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.245 | 29 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 31 | 67 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MPSESTDRKL ARAHNPISTY PPPKVTESLP CPRCESTSTK FCYYNNYNLS QPRHFCKSCR 60 RYWTQGGTLR NIPVGGGTRK NSKRTRISSS SSSGAVVATA NSSSCSSAVT HDRVAEPANP 120 VSVLPCGNPE MGLITMTDVN LNDSVGVPGS GSYTTMLNMQ IQGQNFLGLG GFHNHGYGIG 180 SGLEELELGF GTARSWDIPG TGYACTGGGS GAATSGCNTW QMMNGDDQGG NDVGEDCFGW 240 SGLAISTPAG KDLK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM434546 | 3e-39 | AM434546.2 Vitis vinifera contig VV78X101338.11, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434874.1 | 0.0 | dof zinc finger protein DOF1.6 | ||||
TrEMBL | A0A067H0C6 | 0.0 | A0A067H0C6_CITSI; Uncharacterized protein | ||||
STRING | XP_006434874.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9465 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47655.1 | 3e-35 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g043493m |