PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ERF

Protein Properties

Length: 247aa MW: 26790.1 Da PI: 6.5233

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g039680m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.8	5.5e-18	43	93	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa +l+g orange1.1g039680m 43 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALICLKG 93 59***998.******9...336*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	4.99E-19	43	103	No hit	No description
PROSITE profile	PS51032	21.654	44	101	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-20	44	102	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.3E-30	44	101	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-35	44	107	IPR001471	AP2/ERF domain
Pfam	PF00847	4.4E-11	44	93	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.0E-9	45	56	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.0E-9	67	83	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0034605	Biological Process	cellular response to heat
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071497	Biological Process	cellular response to freezing
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MVKAEQRIEQ EISSKKMPST STSKSKSSSS PPAAGAAGCK KMKKYKGVRM RSWGSWVSEI 60 RAPNQKTRIW LGSYSTAEAA ARAYDAALIC LKGSSANLNF PITSSHYIPD TVMSPKSIQR 120 VAAAAANRFV NDNIIDNNAT TIDTTTPPIS PPLPSSSYLS SSSSSSISSP SLSSSPPDQV 180 DDDVSLMHSL GSYSEPIPMM EQLSWYNFDG IQSPKYVDQM FSSFDQLLPT IDDFLEDGDI 240 RLWSFC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	5e-15	41	102	2	64	ATERF1
3gcc_A	5e-15	41	102	2	64	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.16750	0.0	callus

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269\|PubMed:21069430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:21069430, ECO:0000269\|PubMed:27137403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00156	DAP	Transfer from AT1G21910	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269\|PubMed:21069430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616776	6e-53	JX616776.1 Gossypium hirsutum clone NBRI_GE61662 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006472752.1	1e-121	ethylene-responsive transcription factor ERF014
Swissprot	Q9SFE4	2e-46	ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBL	A0A067DBV4	1e-178	A0A067DBV4_CITSI; Uncharacterized protein
STRING	XP_006472752.1	1e-121	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2999	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21910.1	2e-32	ERF family protein

Link Out ? help Back to Top
Phytozome	orange1.1g039680m

Publications ? help Back to Top
Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology. Plant Signal Behav, 2014. 9(3): p. e28211 [PMID:24614501] Kazama D, et al. Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis. Plants (Basel), 2013. 2(4): p. 769-85 [PMID:27137403]