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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
orange1.1g039654m |
Common Name | CISIN_1g039654mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
M-type_MADS |
Protein Properties |
Length: 226aa MW: 25205 Da PI: 9.724 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g039654m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 69 | 4.3e-22 | 22 | 66 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
n+sn qvtfskRr+g++KKA+EL++LC+a++a+i+fs+ k++ +
orange1.1g039654m 22 NESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 66
89************************************9999887 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 226 aa
Download sequence Send
to blast |
MSGMSSKKSK GRQKVEMVKM PNESNLQVTF SKRRTGLFKK ASELCTLCGA DIAIIVFSPG 60 KKVFSFGHPC VETIVDRYLT RNPPQISGTM QLIEAHRNAS VRELNMQLTQ VLNQLEIEKK 120 RGEELNQMRK ASQAQCWWEA PIEELNLPQL EQLKMSLEEL KKNVGKQAEK MLIQSSNPPQ 180 FFAGSSSNAG GMNLPFDPNN NAAVFNPNNM MPHPGYNPGF GHGFY*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3kov_A | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. |
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Publications
? help Back to Top |
- Xu W, et al.
Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] - Figueiredo DD,Batista RA,Roszak PJ,Köhler C
Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] - Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] - Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] - Zhang S, et al.
FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]
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