PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039361m
Common NameCISIN_1g039361mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 254aa    MW: 28811.7 Da    PI: 7.7275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039361mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.4e-0888134654
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        + +Er+RR+++    + Lr+llP  +     +K s ++   +A +YI++L
  orange1.1g039361m  88 KDIERQRRQHLSMLHASLRSLLPLqS---ITGKRSISDHINEARNYINYL 134
                        679*********************55...********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-982149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-682139No hitNo description
PROSITE profilePS5088810.81782134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-588134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-788150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MIRKMAPTVL VHQFEHSDDP FPFHYNPYQE HSNIQQDQIL QGQALLERNI NSSKMGKGQQ  60
HKLLFVATTK VNDGNSDNNN NKKMILRKDI ERQRRQHLSM LHASLRSLLP LQSITGKRSI  120
SDHINEARNY INYLNKNIQE LGLKRDKLKN LSELGAVGHG SSNWDNCLQN CVTIHPYSGG  180
VEIVINSVHK EENLKLSKVM EAVLEEGLDV IRCASTQTDE GFFHTIQAEE SQVGDLTCVD  240
LRVLQLKLDH SIK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006490280.11e-161transcription factor bHLH118-like
TrEMBLA0A067FQ700.0A0A067FQ70_CITSI; Uncharacterized protein
STRINGXP_006490280.11e-161(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17143711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-31bHLH family protein