PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ERF

Protein Properties

Length: 244aa MW: 26852.6 Da PI: 4.5489

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g038538m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.1	2.2e-18	63	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g orange1.1g038538m 63 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFRTPEMAARAHDVAALSIKG 113 68***998.******843...6********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.5E-12	63	113	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.932	64	121	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-36	64	127	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.55E-21	64	122	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	9.9E-32	64	122	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.2E-10	65	76	IPR001471	AP2/ERF domain
CDD	cd00018	6.82E-32	65	123	No hit	No description
PRINTS	PR00367	3.2E-10	87	103	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MASSSELSNI SSEEAESTST NSSTNDSLSQ QRSRSDTGCR SENHPGSSRP KRKRESESGT 60 KHPVYRGVRM RSWGKWVSEI REPRKKSRIW LGTFRTPEMA ARAHDVAALS IKGDSAVLNF 120 PELVEVLPRP VSLLPRDIQT AATKAASMII DPSSSTCDEV SAQPQQDEQA ELGEIVQLPN 180 IEGSFDFDSA ESHNELNIPI HDDLFDGWIY PPVVQDFVAE FPEHILAAES LIPGDFEASS 240 VWD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-19	59	121	9	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006465666.1	1e-177	ethylene-responsive transcription factor ERF036
Refseq	XP_006495405.1	1e-177	ethylene-responsive transcription factor ERF036-like
Swissprot	Q9LYD3	2e-57	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A067F0G4	1e-177	A0A067F0G4_CITSI; Uncharacterized protein
TrEMBL	A0A2H5PFH9	1e-177	A0A2H5PFH9_CITUN; Uncharacterized protein
STRING	XP_006465666.1	1e-177	(Citrus sinensis)
STRING	XP_006495405.1	1e-177	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	2e-57	ERF family protein

Link Out ? help Back to Top
Phytozome	orange1.1g038538m

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]