PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038389m
Common NameCISIN_1g038389mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 354aa    MW: 39499.4 Da    PI: 4.8498
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038389mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.6e-12187230654
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  orange1.1g038389m 187 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYLKEL 230
                        589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.497181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-15184248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9187230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-12187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-4188234No hitNo description
Gene3DG3DSA:4.10.280.103.9E-15188245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MELTQHGFLE ELLAPPIARR DAWSSFSGGL NEYLPSGWIL DSLDESSTLA AAASNPSSFV  60
GFSAAPSEAS FECPPFTDHL HQGYHPFVDG FTVPEVDTSS YTKNEIPSFP SAQEEYPPMV  120
VEEDRDQLCL RSSDHLHQNH SFEETKSSCA EIEQATSNIT NQGFNMGLCV DRKRKNKKLE  180
GQPSKNLMAE RRRRKRLNDR LSMLRSIVPK ISKMDRTSIL GDTIDYLKEL LERINKLQEE  240
ETELGANQLL IGKFTELKSN EASVRNSPKF DVERREIDTR IDICCSSKPG LLLSTVNTLE  300
VLGLEIQQCV ISCFNDFSLQ ASCSEAAERR TLLSSEEIKQ ALFSNAGYGG KCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172194KRKNKKLEGQPSKNLMAERRRRK
2189196ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.125890.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426202.10.0transcription factor bHLH61
SwissprotQ9LSL16e-90BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A067GGJ40.0A0A067GGJ4_CITSI; Uncharacterized protein
TrEMBLA0A2H5NG140.0A0A2H5NG14_CITUN; Uncharacterized protein
STRINGXP_006426202.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.15e-92beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]