PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038243m
Common NameCISIN_1g038243mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 681aa    MW: 74881.6 Da    PI: 6.5063
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038243mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23.2e-11253309155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  orange1.1g038243m 253 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 309
                        57*******************4444.2455535555.779999**************98 PP
2AP246.77.7e-15352403155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  orange1.1g038243m 352 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 403
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-15253319IPR016177DNA-binding domain
PfamPF008471.1E-8253309IPR001471AP2/ERF domain
CDDcd000184.91E-19253319No hitNo description
SMARTSM003801.1E-22254323IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-12254318IPR001471AP2/ERF domain
PROSITE profilePS5103217.319254317IPR001471AP2/ERF domain
PRINTSPR003674.4E-6255266IPR001471AP2/ERF domain
CDDcd000182.63E-24352411No hitNo description
SuperFamilySSF541711.5E-17352412IPR016177DNA-binding domain
PfamPF008479.6E-10352403IPR001471AP2/ERF domain
SMARTSM003802.4E-33353417IPR001471AP2/ERF domain
PROSITE profilePS5103219.045353411IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-18353411IPR001471AP2/ERF domain
PRINTSPR003674.4E-6393413IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MNNWLGFSLS PQEQLPSSQT DHHHHHQDHS QDSVSHRLGF NSDELSGAVV SGDCFDLTSA  60
DSTTASFSIL EAFNRNNNHS QEWNMKGLGM NTDAMLMATS CNDQNQEPKL ENFLDGHSFS  120
NHEQKLHGCT SVYDTPTAST VTGDYMFQNC SLQLPLDENN NNNARTSNNG GENSNNNNSS  180
IGLSMIKTWL RNQPAPATGP APAPAQAEAV SMNGSGGSSA QSLSLSMSTG SHQTGAIEAV  240
PRKSIDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QTRKGRQGGY DKEEKAARAY  300
DLAALKYWGT TTTTNFPISN YEKEVEEMKH MTRQEYVASL RRKSSGFSRG ASIYRGVTRH  360
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMTRYDVNSI  420
LESSTLPIGG AAKRLKDAEQ AAEMTIDRPT VVADDENMSS QLTADHGWPA IAAFQQAQAH  480
HHHQHQPYSS LQPFGYGQRI WCKQEQDEFN HQLQLGSNIS NTHNFFQPSV MHNLMNMESS  540
SLEHSCSSNN SVIYNNGDHT NGSYQVGYGS NNNNNNGGFV IPMGTVIASN NDHGFGESDH  600
QAAAKALAFE NMFSSSTSSS DPYQARNLYY LPQQQSSASL VKAAGAYDNW VPTAVPTLAQ  660
RSGNIALCHG APTFTVWNDT *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024038292.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A067E4A60.0A0A067E4A6_CITSI; Uncharacterized protein
STRINGXP_006480499.10.0(Citrus sinensis)
STRINGXP_006428686.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-128AP2 family protein