PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g038013m

Common Name

CISIN_1g038013mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 495aa MW: 54778.5 Da PI: 7.961

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g038013m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.9	6.1e-40	144	204	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss orange1.1g038013m 144 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSS 204 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	141	201	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	146	202	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.947	148	202	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	150	186	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MSEVKDSAIK LFGQMIPLSL LKFQQQQGPE TLANDHSASD DDHHQEACCD RNPETALREE 60 SSNKQQQQQQ QQQQRDDKEH SGQQIIEDEH EDVTSKQKDP ITSSGNSDNP KTLSVDRETR 120 SLKSSKNGEQ SETSNSQEKT LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR 180 YWTAGGTMRN VPVGAGRRKN KSSSASNYRQ IMISEALRTF QANASGGVYK PYSGNNGTIL 240 TFGSDSPLHE SVASVPNLSD KSQNCLRNGF HRSEQKILVS GTDNGSSITA SSSLEKGGNC 300 TSQDIRTKNY RGSVPQVPYF PGPPWPHHWN TPMPPPGFYP SGFPVSFYPE TTYWGCAVPG 360 YCNMPCVPPN ASLQSQFVPK TLSTPTLGKH SRDGDIITPA STEKEEPSTG SRNSERCVLV 420 PKTLRIDDPS EAAKSSIWAT LGIKNEKTTS AGECLFKGFQ SKSDHRNYIA ETSEVLQANP 480 AALSRSLNFH ERHN*

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MSEVKDSAIK LFGQMIPLSL LKFQQQQGPE TLANDHSASD DDHHQEACCD RNPETALREE  60
SSNKQQQQQQ QQQQRDDKEH SGQQIIEDEH EDVTSKQKDP ITSSGNSDNP KTLSVDRETR  120
SLKSSKNGEQ SETSNSQEKT LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR  180
YWTAGGTMRN VPVGAGRRKN KSSSASNYRQ IMISEALRTF QANASGGVYK PYSGNNGTIL  240
TFGSDSPLHE SVASVPNLSD KSQNCLRNGF HRSEQKILVS GTDNGSSITA SSSLEKGGNC  300
TSQDIRTKNY RGSVPQVPYF PGPPWPHHWN TPMPPPGFYP SGFPVSFYPE TTYWGCAVPG  360
YCNMPCVPPN ASLQSQFVPK TLSTPTLGKH SRDGDIITPA STEKEEPSTG SRNSERCVLV  420
PKTLRIDDPS EAAKSSIWAT LGIKNEKTTS AGECLFKGFQ SKSDHRNYIA ETSEVLQANP  480
AALSRSLNFH ERHN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006483138.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A067GTJ0	0.0	A0A067GTJ0_CITSI; Uncharacterized protein
STRING	XP_006483138.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-93	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	orange1.1g038013m