PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037441m
Common NameCISIN_1g037441mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 367aa    MW: 40713.2 Da    PI: 8.4412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037441mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.8e-12186232455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++Er+RR+++ ++f  L  +lP +     kK++Ka++L  A++Y+k+Lq
  orange1.1g037441m 186 DHIMAERKRREKLSQRFIALSAILPGL-----KKMDKASVLGDAIRYVKELQ 232
                        699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.186182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16186244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9186232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-12187236No hitNo description
SuperFamilySSF474591.57E-16187245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-14188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDASSAKWLA ELGMDEYNII HQCHMESVAD LFSSKQDITA ALGGNLKQSL STSESYSSYP  60
NNNNNGKSQT SFDERPNKLL KTYSWKSTTT TDRASADHSS PTPQPHFLNF DQKPISSNPN  120
KQLYGNLNMY SCSLKPKVEA PPSTGNTTSP PPFPPLGSQN YETVINPNHG TKRSYPVTRT  180
PALAQDHIMA ERKRREKLSQ RFIALSAILP GLKKMDKASV LGDAIRYVKE LQERVKVLEE  240
QTKKRTVESV VYVKKSQLVV SGTDDESSSC DDNSEISTSD ATLPEIEARV SDKDVLIRIH  300
CEKQKGLLPK LISQLEMLHL SITNTSVLPF GNSTLDITII ALKNAEFCTT MKDLVKDIRL  360
AFLKLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13186241863Transcription factor MYC2
5gnj_B3e-13186241863Transcription factor MYC2
5gnj_E3e-13186241863Transcription factor MYC2
5gnj_F3e-13186241863Transcription factor MYC2
5gnj_G3e-13186241863Transcription factor MYC2
5gnj_I3e-13186241863Transcription factor MYC2
5gnj_M3e-13186241863Transcription factor MYC2
5gnj_N3e-13186241863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190195ERKRRE
2191196RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024036203.10.0transcription factor bHLH18
TrEMBLA0A067GGE00.0A0A067GGE0_CITSI; Uncharacterized protein
STRINGXP_006426181.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-67bHLH family protein