PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037119m
Common NameCISIN_1g037119mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 268aa    MW: 29146.9 Da    PI: 8.6982
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037119mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-202979256
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  orange1.1g037119m 29 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 79
                       589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-152979IPR001471AP2/ERF domain
SMARTSM003804.5E-362992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-282988IPR001471AP2/ERF domain
PROSITE profilePS5103220.5342986IPR001471AP2/ERF domain
CDDcd000181.17E-302988No hitNo description
SuperFamilySSF541713.53E-203087IPR016177DNA-binding domain
PRINTSPR003672.5E-73041IPR001471AP2/ERF domain
PRINTSPR003672.5E-75268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAAGSETSKN PTTTNSKGGQ ATTKPAARRF VGVRQRPSGR WVAEIKDSSQ RVRLWLGTYD  60
TPEEAARAYD EAARALRGEN ARTNFASSAV NNNNNPLNHS DSGNSSPCVN GRFVAQSDGR  120
NGLSFSSLKA KLSKNLQSIM ARTSENNKKS TKSRVSDHFT FASIFHFRSY QYQTPVDLKN  180
IEKVVQPSII VPQAADHMHD PSSWESSSTV SDGSSTEWGG FRQHGLDSDG LDSDIGEVVV  240
DPTMGWIDSP ENIGACTSEI EASRSRSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1429851471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006491461.10.0ethylene-responsive transcription factor ERF027-like
RefseqXP_024043369.10.0ethylene-responsive transcription factor ERF027
TrEMBLA0A067H4Y10.0A0A067H4Y1_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006491461.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1829289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-14related to AP2 11