PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036935m
Common NameCISIN_1g036935mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 400aa    MW: 45524.8 Da    PI: 4.802
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036935mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11e-1539128198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k +++s+v+   +l l++kf+ ++   ++++++++ledesg +++ k+ ++k +    l++GW++F  a++L egD +vF+l+  s+f  
  orange1.1g036935m  39 FIKFMLRSHVTGGFWLGLSRKFCIDNL--PKQDTMIVLEDESGSEYDTKYLVEKIG----LSAGWRGFSIAHKLVEGDALVFHLVTLSKF-- 122
                        89*********************8884..347789***************555555....***********************9876888.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        +v ++r
  orange1.1g036935m 123 KVYIVR 128
                        777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-1832130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2133133IPR015300DNA-binding pseudobarrel domain
CDDcd100178.10E-2437128No hitNo description
PROSITE profilePS5086312.23839130IPR003340B3 DNA binding domain
SMARTSM010193.9E-2039130IPR003340B3 DNA binding domain
PfamPF023621.0E-1339128IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
EKRKRSTYDN LYDNEEVKNA VMKQANDIQA NLDPQFPSFI KFMLRSHVTG GFWLGLSRKF  60
CIDNLPKQDT MIVLEDESGS EYDTKYLVEK IGLSAGWRGF SIAHKLVEGD ALVFHLVTLS  120
KFKVYIVRSR GSDEVDCALG LLKLETCNQQ VESVSFNYEY HAEKHICEEE DNKCWEPLAQ  180
NIQKDNQMIS CTGLELVSEQ SEDESKDFGS EVLNGLKFCE SVVDFKEVKS FQDFSIVVND  240
LVIDSALSKY LRTKYYELCC SQNSFLHNSV LDGLNCKLIS GMISETINIT DAIRASKLTT  300
PHDNFDTWDK TLKAFKMMGM NVGFLLIRLD QLMNLASTSK RLQEARLERA NAKEEKSALE  360
LKLSEVRERI DRLDSEIEAL GANPNNLDVM FQEMAKAPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024035069.10.0B3 domain-containing protein Os01g0234100 isoform X1
RefseqXP_024035070.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A067DHW70.0A0A067DHW7_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006423042.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16718911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-39B3 family protein