PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036655m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 244aa    MW: 26684.8 Da    PI: 7.0723
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036655mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-193584255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  orange1.1g036655m 35 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAAMAYDAAARKLYG 84
                       69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.50E-223494No hitNo description
PfamPF008473.2E-143584IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-303593IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-213592IPR016177DNA-binding domain
SMARTSM003803.5E-373598IPR001471AP2/ERF domain
PROSITE profilePS5103222.6293592IPR001471AP2/ERF domain
PRINTSPR003677.2E-103647IPR001471AP2/ERF domain
PRINTSPR003677.2E-105874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGGIGEKKQL KKPAQASSRK GCMRGKGGPE NALCTYKGVR QRTWGKWVAE IREPNRGARL  60
WLGTFDTSHE AAMAYDAAAR KLYGPDAKLN LPELPSAQSH HLPASSVNCT QHVAQRRNQP  120
QMIHNSGITC SSNSPLPRSS NNDATQVYNF NYNNSAMSFL DNGSVGSHGK LAENEVKFSL  180
NEQETDGFWE NLNVNSPVFD ESIWAEAAMS VDYPVMGEQG LLNANFVDAS CCGWDMLPTP  240
WCV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-173692360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435084.10.0dehydration-responsive element-binding protein 2D
TrEMBLV4V8720.0V4V872_9ROSI; Uncharacterized protein
STRINGXP_006435084.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.18e-50ERF family protein