PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036437m
Common NameCISIN_1g036437mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 432aa    MW: 48441.7 Da    PI: 7.4183
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036437mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.4e-09152174426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        + C+ ++r+G C+ Gd C FaHg
  orange1.1g036437m 152 AVCSEYRRGGGCSLGDDCEFAHG 174
                        78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.07E-5147178IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4148175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.066149176IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-7152174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5152176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-4181212IPR000571Zinc finger, CCCH-type
SMARTSM003561.6184207IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484184208IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MSSAADQQHK LLSPKSNGAK LLFKDIEVPP RKLLLQNKKS HHHHHHHHHH QDICSGSPRS  60
GSGSGSDSAS YLFYPDQQEM NILHNKFLPF NNTDADSDPD SDPYASDHFR MYEFKIRRCT  120
RSRSHDWTDC PFAHPSEKAR RRDPRRYHYS GAVCSEYRRG GGCSLGDDCE FAHGVFECWL  180
HPSRYRTEAC KDGKNCKRKV CFFAHSPRQL RILPEISSQY SSSPSSVNNN NQKISSHCCM  240
YCHHHSVNSS PTSTLLGNMS HLSRSPSLSP PLSPVKHGLI SPISRYSATT PVPADRLSKF  300
SNSSEMSMSY KDVLNELMTS MDAISFNEVS SPMSLTPSND VNACPWIDVS SFNVEDQQQF  360
VLSPSTPSPS AGSIMNPFAA HHDYFSNKSF LDDDQKMINY HNHIHNNSNG SCQLASDTPD  420
PDLGWVNELL T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447247.10.0zinc finger CCCH domain-containing protein 2
RefseqXP_006469930.10.0zinc finger CCCH domain-containing protein 2
TrEMBLA0A067DU540.0A0A067DU54_CITSI; Uncharacterized protein
STRINGXP_006469930.10.0(Citrus sinensis)
STRINGXP_006447247.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-77C3H family protein