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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
orange1.1g032227m |
| Common Name | CISIN_1g032227mg, LOC102618163 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
LSD |
| Protein Properties |
Length: 146aa MW: 15104.6 Da PI: 7.9166 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g032227m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 42.3 | 1.3e-13 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr+lL YP GA+sV+Ca+C++V
orange1.1g032227m 28 CSGCRNLLLYPVGATSVCCAVCNAV 52
************************9 PP
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| 2 | zf-LSD1 | 46.8 | 4.9e-15 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggC+tlL+Y rGA+sV+C++C+tV
orange1.1g032227m 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
************************9 PP
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| 3 | zf-LSD1 | 41.9 | 1.7e-13 | 105 | 129 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Cr lL+Y +GA+sV+Ca+C++V
orange1.1g032227m 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
***********************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009814 | Biological Process | defense response, incompatible interaction |
| GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response |
| GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response |
| GO:0045595 | Biological Process | regulation of cell differentiation |
| GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
| Sequence ? help Back to Top |
| Protein Sequence Length: 146 aa
Download sequence Send
to blast |
MPVPLAPYPT PPAPYTPPAN GAQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT 60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCRM LLMYQYGARS 120
VKCAVCNFVT AVGASTSTTE QKFNT*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
