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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
orange1.1g030615m |
Common Name | CISIN_1g029862mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
YABBY |
Protein Properties |
Length: 175aa MW: 19402.2 Da PI: 9.3138 |
Description |
YABBY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g030615m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | YABBY | 183.7 | 1e-56 | 12 | 147 | 22 | 170 |
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvp 113
l vsvP +slf++vtvrCGhC++ll vn+ a q+++ ++ ++++ + e++ +k +++++++ s + e ++e+pr+p
orange1.1g030615m 12 LGVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDP--------QKQHINLEDSITKDCGSSSKCNKFSSAF----ETAEHETPRMP 91
77**************************9999999998885........4455555555555555555554444444....5678999**99 PP
YABBY 114 pvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
orange1.1g030615m 92 P-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 147
9.9****************************************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0007275 | Biological Process | multicellular organism development |
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
Protein Sequence Length: 175 aa
Download sequence Send
to blast |
MATNVLVFLF FLGVSVPCSS LFNIVTVRCG HCANLLNVNM VSALQAVPLQ DPQKQHINLE 60 DSITKDCGSS SKCNKFSSAF ETAEHETPRM PPIRPPEKRQ RVPSAYNRFI KEEIQRIKAS 120 NPDISHREAF STAAKNWAHF PHIHFGLKLD GNKQAKLDKA AAYAEGTQKS NGFY*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. |
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}. |
Functional Description ? help
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Source |
Description |
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |