PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GATA

Protein Properties

Length: 182aa MW: 19895.1 Da PI: 7.7062

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g030237m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.3	8e-17	92	127	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ kg orange1.1g030237m 92 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANKG 127 ***99999*********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06203	2.0E-16	23	65	IPR010402	CCT domain
PROSITE profile	PS51017	12.531	23	65	IPR010402	CCT domain
PROSITE profile	PS50114	9.882	86	145	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.7E-15	86	139	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	8.08E-12	88	135	No hit	No description
Gene3D	G3DSA:3.30.50.10	5.8E-16	90	132	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.37E-13	91	139	No hit	No description
Pfam	PF00320	1.2E-14	92	127	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	92	119	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MEVIPHSQRG IADYPAKCTQ PQRAASLDRF RQKRKERCFD KKVRYSVRQE VALRMQRNKG 60 QFTSAKKCEG GALGWSNAQD PGQDDSPSET SCTHCGISSK STPMMRRGPS GPRSLCNACG 120 LFWANKGALR DLGKKMEDQP LTPAEQGEGE VNDSDCGTAA HTDNELVSFS NDDDSALISE 180 H*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269\|PubMed:10945256, ECO:0000269\|PubMed:14966217}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006472435.1	1e-134	GATA transcription factor 25 isoform X1
Swissprot	Q9LRH6	2e-63	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A067GRC9	1e-133	A0A067GRC9_CITSI; Uncharacterized protein
STRING	XP_006472435.1	1e-133	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	6e-66	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	orange1.1g030237m

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]