PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g028946m
Common NameCISIN_1g019764mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YA
Protein Properties Length: 202aa    MW: 22215.9 Da    PI: 10.6228
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g028946mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA52.41.7e-161452140
          CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylh 40
                       +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k+rk   h
  orange1.1g028946m 14 EEPVYVNAKQYRGILRRRQSRAKAELEKKV-IKARKVTFH 52
                       69****************************.999998877 PP

2CBFB_NFYA43.88.4e-1477993658
          CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58
                       +pylheSRh+hA+rR+Rg+gGrF
  orange1.1g028946m 77 QPYLHESRHQHAMRRARGCGGRF 99
                       8*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.9E-2712102IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.82713102IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.5E-271599IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068601838IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MHQARMPLPL EMEEEPVYVN AKQYRGILRR RQSRAKAELE KKVIKARKVT FHSLKGATIF  60
YNKTLQGLDT YALFSLQPYL HESRHQHAMR RARGCGGRFL NTKKLNDNAA NSAEKGMNSG  120
ADSSKGSTNG TGSVDSSIVQ QERAMEENAH MEHTSSNSNS NNRSLLSMYN TSSGSVEGNF  180
LGQQRGSMQG NGAPRGALPV K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.71880.0callus| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269|PubMed:11867211}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150394e-35AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439109.11e-103nuclear transcription factor Y subunit A-4
RefseqXP_006482871.11e-103nuclear transcription factor Y subunit A-4-like
SwissprotQ945M92e-29NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A067GXL11e-147A0A067GXL1_CITSI; Uncharacterized protein
TrEMBLA0A067H7671e-145A0A067H767_CITSI; Uncharacterized protein
STRINGXP_006482871.11e-103(Citrus sinensis)
STRINGXP_006439109.11e-103(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-25nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]