 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
orange1.1g028946m |
Common Name | CISIN_1g019764mg |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
Family |
NF-YA |
Protein Properties |
Length: 202aa MW: 22215.9 Da PI: 10.6228 |
Description |
NF-YA family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g028946m | genome | ICGC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | CBFB_NFYA | 52.4 | 1.7e-16 | 14 | 52 | 1 | 40 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylh 40
+ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k+rk h
orange1.1g028946m 14 EEPVYVNAKQYRGILRRRQSRAKAELEKKV-IKARKVTFH 52
69****************************.999998877 PP
|
2 | CBFB_NFYA | 43.8 | 8.4e-14 | 77 | 99 | 36 | 58 |
CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58
+pylheSRh+hA+rR+Rg+gGrF
orange1.1g028946m 77 QPYLHESRHQHAMRRARGCGGRF 99
8*********************9 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0016602 | Cellular Component | CCAAT-binding factor complex |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 202 aa
Download sequence Send
to blast |
MHQARMPLPL EMEEEPVYVN AKQYRGILRR RQSRAKAELE KKVIKARKVT FHSLKGATIF 60 YNKTLQGLDT YALFSLQPYL HESRHQHAMR RARGCGGRFL NTKKLNDNAA NSAEKGMNSG 120 ADSSKGSTNG TGSVDSSIVQ QERAMEENAH MEHTSSNSNS NNRSLLSMYN TSSGSVEGNF 180 LGQQRGSMQG NGAPRGALPV K*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269|PubMed:11867211}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP015039 | 4e-35 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |