PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YA

Protein Properties

Length: 205aa MW: 22115.5 Da PI: 10.4859

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g028767m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.3	2.1e-32	31	87	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy +Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+RgsgGrF orange1.1g028767m 31 QEPVYVNAKQYMGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGSGGRF 87 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.6E-35	29	90	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.698	30	90	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.8E-28	32	87	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.8E-24	33	55	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	35	55	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	5.8E-24	64	87	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MMAAYGHQPV GYPQFVGMPH ARMPLPLEMA QEPVYVNAKQ YMGILRRRQA RAKAELEKKL 60 IKVRKPYLHE SRHQHAMRRA RGSGGRFAKK TDDASKGNSE KKGGGSGIRP SLSGSSSGSE 120 PVPSDSAETW NSSASQQDVG GSQAHNMHEA RNHANANGGY QNHGLQASTY HSHLGDRGET 180 GDCSGKQWGS ISSNQASQRP LAIQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-19	31	87	2	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.6525	0.0	callus\| flower\| fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269\|PubMed:11867211}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006446125.1	1e-148	nuclear transcription factor Y subunit A-1 isoform X1
Refseq	XP_006446126.1	1e-148	nuclear transcription factor Y subunit A-1 isoform X1
Refseq	XP_006446127.1	1e-148	nuclear transcription factor Y subunit A-1 isoform X1
Refseq	XP_006446128.1	1e-148	nuclear transcription factor Y subunit A-1 isoform X1
Refseq	XP_006470619.1	1e-148	nuclear transcription factor Y subunit A-1
Refseq	XP_006470620.1	1e-148	nuclear transcription factor Y subunit A-1
Refseq	XP_006470621.1	1e-148	nuclear transcription factor Y subunit A-1
Refseq	XP_006470622.1	1e-148	nuclear transcription factor Y subunit A-1
Swissprot	Q945M9	2e-58	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A067FDI1	1e-148	A0A067FDI1_CITSI; Uncharacterized protein
STRING	XP_006470619.1	1e-148	(Citrus sinensis)
STRING	XP_006446125.1	1e-148	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	2e-55	nuclear factor Y, subunit A9

Link Out ? help Back to Top
Phytozome	orange1.1g028767m

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]