PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026468m
Common NameCISIN_1g026312mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Whirly
Protein Properties Length: 239aa    MW: 25652.6 Da    PI: 10.1446
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026468mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly187.62.2e-58651982137
             Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 
                        vyk+kaa++v++v+ptf +ldsg lk+kr+G +ll++a+a++erkydW kkq+fals+tev++l+ +++++s+effhdpa+ +sn+G++rk+
  orange1.1g026468m  65 VYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFALSPTEVGSLLTMGPRDSSEFFHDPAMLSSNAGQMRKS 156
                        8******************************************************************************************* PP

             Whirly  94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                        l+++  +dG  +f++l+v n+++k+ne+f+vPvs aefav++++
  orange1.1g026468m 157 LSIKANADG--FFISLNVANNILKTNERFVVPVSTAEFAVMKTA 198
                        ****99995..9******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.7E-6152201IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.35E-5057201IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.1E-5665197IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MMKLSRSLLS SRSQLSEKLL AGEANYVRDG LKSHVLISQA GMSTTGHDVS AKGSLGGRIF  60
APYYVYKGKA AFSVDPVLPT FMKLDSGDLK VKRKGVILLT FAPAIGERKY DWAKKQHFAL  120
SPTEVGSLLT MGPRDSSEFF HDPAMLSSNA GQMRKSLSIK ANADGFFISL NVANNILKTN  180
ERFVVPVSTA EFAVMKTACS VCTNEIASRS QLGSPAVICC SQVTSVLGDS RSKSITEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A6e-75532065160StWhy2
3n1i_A6e-75532065160protein StWhy2
3n1j_A6e-75532065160Protein StWhy2
3n1k_A6e-75532065160protein StWhy2
3n1l_A6e-75532065160protein StWhy2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.70690.0callus| flower| fruit| stem
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006478304.11e-145single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
SwissprotD9J0341e-82WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A067E8I31e-175A0A067E8I3_CITSI; Uncharacterized protein
STRINGXP_006478304.11e-145(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-75WHIRLY 2