 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
orange1.1g024859m |
Common Name | CISIN_1g016887mg, LOC102622694 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
Family |
HB-other |
Protein Properties |
Length: 262aa MW: 29167 Da PI: 7.5057 |
Description |
HB-other family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g024859m | genome | ICGC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 22.4 | 2e-07 | 13 | 74 | 6 | 55 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
+f++ +++e+e ++ n ps+e LA+k ++ +qV +WFqNrR+
orange1.1g024859m 13 RFNPAEVTEMEGILQEhhNAMPSREILVALAEKFsesperkgkiMVQMKQVWNWFQNRRYAI 74
588889999999999766889*********************999**************865 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 262 aa
Download sequence Send
to blast |
MGRPPSNGGP AFRFNPAEVT EMEGILQEHH NAMPSREILV ALAEKFSESP ERKGKIMVQM 60 KQVWNWFQNR RYAIRAKSIK SPGKLNVTPL ARDDSTPGRN VPQPVAAPIP IPMSASVPPT 120 MPASANVPSV STAGRAASES TFMEFEAKSA RDGAWYDVSA FLAQRNFDTA DPEVQVRFAG 180 FGAEEDEWVN IKRHVRQRSL PCEASECVAV LPGDLILCFQ EGKDQALYFD AHVLDAQRRR 240 HDVRGCRCRF LVRYDHDQSE V*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4iuq_A | 5e-42 | 143 | 260 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 5e-42 | 143 | 260 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 5e-42 | 143 | 260 | 4 | 121 | SHH1 SAWADEE |
4iur_B | 5e-42 | 143 | 260 | 4 | 121 | SHH1 SAWADEE |
4iut_A | 5e-42 | 143 | 260 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 5e-42 | 143 | 260 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 5e-42 | 143 | 260 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 5e-42 | 143 | 260 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 5e-42 | 143 | 260 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 5e-42 | 143 | 260 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT3G18380.3 | 1e-120 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |