PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GATA

Protein Properties

Length: 263aa MW: 28237.9 Da PI: 4.8967

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g024832m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.5	1.4e-16	173	208	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ kg orange1.1g024832m 173 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANKG 208 ***99999*********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	10.52	65	100	IPR010399	Tify domain
Pfam	PF06200	1.0E-8	68	90	IPR010399	Tify domain
Pfam	PF06203	3.7E-16	104	146	IPR010402	CCT domain
PROSITE profile	PS51017	12.531	104	146	IPR010402	CCT domain
SMART	SM00401	2.7E-15	167	220	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	9.882	167	226	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.57E-11	169	215	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.1E-15	171	213	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	8.75E-15	172	220	No hit	No description
PROSITE pattern	PS00344	0	173	200	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.2E-14	173	208	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MYGQSQSMNI SSQMSGGGAA ADEDDVSVAA DDHHLSYDPH SALENGIVVV EDVAHDSGYA 60 TGGNELSNSS QLTLSFRGQV YVFDSVTPDK GIADYPAKCT QPQRAASLDR FRQKRKERCF 120 DKKVRYSVRQ EVALRMQRNK GQFTSAKKCE GGALGWSNAQ DPGQDDSPSE TSCTHCGISS 180 KSTPMMRRGP SGPRSLCNAC GLFWANKGAL RDLGKKMEDQ PLTPAEQGEG EVNDSDCGTA 240 AHTDNELVSF SNDDDSALIS EH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.1418	1e-121	flower\| fruit\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269\|PubMed:10945256, ECO:0000269\|PubMed:14966217}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024040655.1	0.0	GATA transcription factor 25 isoform X3
Swissprot	Q9LRH6	9e-75	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A067H107	0.0	A0A067H107_CITSI; Uncharacterized protein
STRING	XP_006472435.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	7e-72	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	orange1.1g024832m

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]