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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
orange1.1g024640m |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
MIKC_MADS |
Protein Properties |
Length: 266aa MW: 30225.6 Da PI: 8.9142 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g024640m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 99.6 | 1.2e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
orange1.1g024640m 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
79***********************************************96 PP
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2 | K-box | 98.2 | 1.2e-32 | 86 | 170 | 13 | 97 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
+++s +qe+ +Lk +e Lqr+qR+llGedL++Ls keL+qLe+qLe+slk++Rs+K++ +++q+++lqk+e+ l e nk Lrkk
orange1.1g024640m 86 ETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKK 170
6899*******************************************************************************98 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.207 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.07E-32 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.31E-44 | 2 | 74 | No hit | No description |
PRINTS | PR00404 | 1.1E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.5E-27 | 86 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.153 | 87 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 266 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 PSIMKTLERY HRCSFGAHEA NRPPIETQST YQEYLRLKTA VELLQRSQRN LLGEDLDPLS 120 TKELEQLEHQ LETSLKHVRS TKTQCMVDQL SDLQKREQVL LELNKGLRKK AFLGNYTCLT 180 TPPFTQLDES NIAHQVPPHR LAWEAASAGQ NITYNRYPVQ SEGFFQPLSG GTPILQIGYN 240 PMGSEEAHIP VHAQNVTGFI PGWML*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 4e-27 | 75 | 168 | 1 | 98 | Developmental protein SEPALLATA 3 |
4ox0_B | 4e-27 | 75 | 168 | 1 | 98 | Developmental protein SEPALLATA 3 |
4ox0_C | 4e-27 | 75 | 168 | 1 | 98 | Developmental protein SEPALLATA 3 |
4ox0_D | 4e-27 | 75 | 168 | 1 | 98 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |