PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g023105m

Common Name

CISIN_1g023105mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GRF

Protein Properties

Length: 288aa MW: 32741.5 Da PI: 9.0144

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g023105m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.6	5.9e-25	86	129	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e orange1.1g023105m 86 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129 79***************************************987 PP
2	QLQ	59.2	1.2e-20	15	49	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l++Ky++++ PvPp+Ll+ i+ orange1.1g023105m 15 PFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIK 49 8******************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.2E-12	14	50	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.585	15	50	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.4E-16	15	48	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.719	86	130	IPR014977	WRC domain
Pfam	PF08879	9.0E-21	87	129	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MNNGNHNMSA INRFPFTASQ WQELEHQALI FKYMVSGIPV PPDLLFTIKR SYYFDRSPPS 60 AAKHFTHQHQ HVEWNCFQVG LGRKIDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG 120 KNRSRKPVEL NTSTCTANKS SSALSRYVYG PKEEVDEHAF FSEPSGKVRS FSAVSMDDSW 180 QLTPLTMSSS CSSSSSKQRS FSGLQSDYSD LQLKSCADNT PKQQDKQPEE IPQKTVHRFF 240 DEWPPKSRDS WLDLDDKSSK NASLSTASLS ISIPSSHDFP IFSSRAP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC182662	7e-50	AC182662.2 Populus trichocarpa clone Pop1-15O24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006451560.1	0.0	growth-regulating factor 6 isoform X1
Refseq	XP_006490822.1	0.0	growth-regulating factor 6 isoform X1
Swissprot	Q6AWY4	8e-55	GRF5_ORYSJ; Growth-regulating factor 5
TrEMBL	A0A067EE88	0.0	A0A067EE88_CITSI; Uncharacterized protein
STRING	XP_006490822.1	0.0	(Citrus sinensis)
STRING	XP_006451560.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4567	26	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	3e-53	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	orange1.1g023105m

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]