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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
orange1.1g022928m |
| Common Name | CISIN_1g022880mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
C3H |
| Protein Properties |
Length: 291aa MW: 30570.8 Da PI: 9.9956 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g022928m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 19.5 | 1.7e-06 | 33 | 56 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25
k ++C f+ t C++G++C+F H
orange1.1g022928m 33 KSKPCTKFFSTAGCPFGESCHFLH 56
7789******************** PP
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| 2 | zf-CCCH | 21.2 | 5.1e-07 | 108 | 121 | 14 | 27 |
--TTTTT-SS-SSS CS
zf-CCCH 14 tCkyGdrCkFaHgp 27
Ck+Gd+C+FaHg+
orange1.1g022928m 108 GCKFGDKCHFAHGE 121
6***********96 PP
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| 3 | zf-CCCH | 36.4 | 8.6e-12 | 257 | 281 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC +fa+ G C +GdrC+FaHg
orange1.1g022928m 257 FKTKLCGNFAK-GSCTFGDRCHFAHG 281
69*********.*************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.699 | 31 | 59 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.6 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.03E-6 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.4E-4 | 33 | 56 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.3E-7 | 33 | 56 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.88E-7 | 93 | 125 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 11.16 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.2E-11 | 95 | 125 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.2 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.7E-4 | 108 | 121 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 7.89E-16 | 154 | 234 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 1.0E-16 | 163 | 232 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 3.8E-13 | 163 | 233 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.948 | 164 | 228 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 1.4E-12 | 166 | 230 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 1.67E-15 | 166 | 228 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 9.3E-16 | 254 | 287 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.44E-8 | 255 | 287 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.892 | 256 | 283 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.7E-7 | 256 | 282 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.8E-9 | 257 | 281 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MDTRKRTKPE TGINANGVFK KSKHESESGV GSKSKPCTKF FSTAGCPFGE SCHFLHYFPG 60
GYNAVAQMMN LPQAVPAPSR NMAVPPPASN GPTVVKSRMC NRLNSAEGCK FGDKCHFAHG 120
EWELGKPIAI SHDDPRAFGA VPGRMGGRYE PPPAPGPAAS FGASATAKIS VDASLAGAII 180
GKGGVNSKQI CRQTGAKLSI RDHEADPNLR NIELEGSFEQ IKQASAMVRE LIVRIGPAHA 240
KNPATAGSAA HPLSSNFKTK LCGNFAKGSC TFGDRCHFAH GAAELRKTAI *
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