PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020210m
Common NameCISIN_1g020210mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 330aa    MW: 36410.7 Da    PI: 5.9276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020210mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11129179154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a++    ++++k+L
  orange1.1g020210m 129 QRMTHIAVERNRRKQMNEYLAILRSLMPPS---YVQRGDQASVIGGSINFVKEL 179
                        79***************************9...899999999999999998888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.55E-12127184No hitNo description
PROSITE profilePS5088814.78128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-15128193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-9129179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12129195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-9134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MALEAVVYPK PQDPFGYSCN KDIYSSPGEG GGAWGYDFCF QQEDRTLLGI IDANIIEQGL  60
HANWDSSSSP TIMQHANESW GPNSSPDAYA ADQTLSAGSF SPAAAATTGG RRKRRRTKSS  120
KNKEEIENQR MTHIAVERNR RKQMNEYLAI LRSLMPPSYV QRGDQASVIG GSINFVKELE  180
QLLQSMEAQK RNTSQLLKAG DNGVSSPFAN FFTFPQYSTR SSQSNNLAPD HESSMTENVA  240
DIEVNMAESH ANIKILTKKR PRQLLKMVAS FQNLRLSVLH LNVSTVDQMV LYSVSVKVEE  300
GSQLNTVDEI AAAVHQILLE IEEEATAFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111115RKRRR
2111116RKRRRT
3129140RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433906.10.0transcription factor bHLH96
SwissprotQ9C7T41e-93BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A067GQU90.0A0A067GQU9_CITSI; Uncharacterized protein
STRINGXP_006433906.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]